Evidence map›Paper›PMID 22960573›Full record

ReviewCancer letters2013

The analysis of DNA adducts: the transition from (32)P-postlabeling to mass spectrometry.

Joshua J Klaene, Vaneet K Sharma, James Glick, Paul Vouros

Abstract readReview
In one paragraph

Review in Cancer letters, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed.

  1. Machine learning-enhanced surface-enhanced spectroscopic detection of polycyclic aromatic hydrocarbons in the human placenta.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  2. Article
  3. Mass spectrometric profiling of DNA adducts in the human stomach associated with damage from environmental factors.Genes and environment : the official journal of the Japanese Environmental Mutagen Society · 2021
    Article
  4. The Key Characteristics of Carcinogens: Relationship to the Hallmarks of Cancer, Relevant Biomarkers, and Assays to Measure Them.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2020
    Article
  5. Review
  6. Review
  7. Article
  8. Article
  9. Targeted High Resolution LC/MSFrontiers in chemistry · 2019
    Article
  10. Review
  11. Article
  12. Recent technical and biological development in the analysis of biomarker N-deoxyguanosine-C8-4-aminobiphenyl.Journal of chromatography. B, Analytical technologies in the biomedical and life sciences · 2018
    Review
  13. Review
  14. Article
  15. Article
  16. Aptamers for DNA Damage and Repair.International journal of molecular sciences · 2017
    Review
  17. The Future of DNA Adductomic Analysis.International journal of molecular sciences · 2017
    Article
  18. Human Biomonitoring of DNA Adducts by Ion Trap Multistage Mass Spectrometry.Current protocols in nucleic acid chemistry · 2016
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Joshua J KlaeneDepartment of Chemistry and Chemical Biology, Barnett Institute, Northeastern University, Boston, MA 02115, United States.
Vaneet K SharmaDepartment of Chemistry and Chemical Biology, Barnett Institute, Northeastern University, Boston, MA 02115, United States.
James GlickDepartment of Chemistry and Chemical Biology, Barnett Institute, Northeastern University, Boston, MA 02115, United States.
Paul VourosDepartment of Chemistry and Chemical Biology, Barnett Institute, Northeastern University, Boston, MA 02115, United States. Electronic address: p.vouros@neu.edu.

Funding

LC-MS Analysis of DNA Adducts of Aromatic Amines: Relationship to Bladder CancerR01CA069390 · NCI · NORTHEASTERN UNIVERSITY · PI VOUROS, PAUL · 1996 to 2013
$2.7M
Relating DNA Adducts and ToxicogenomicsR01CA112231 · NCI · NORTHEASTERN UNIVERSITY · PI VOUROS, PAUL · 2005 to 2009
$2.2M
NCI NIH HHS R01 CA069390NCI NIH HHS R01 CA112231NCI NIH HHS R01 CA693390
6 · The paper itself

Abstract

The technique of (32)P-postlabeling, which was introduced in 1982 for the analysis of DNA adducts, has long been the method of choice for in vivo studies because of its high sensitivity as it requires only <10μg DNA to achieve the detection of 1 adduct in 10(10) normal bases. (32)P-postlabeling has therefore been utilized in numerous human and animal studies of DNA adduct formation. Like all techniques (32)P-postlabeling does have several disadvantages including the use of radioactive phosphorus, lack of internal standards, and perhaps most significantly does not provide any structural information for positive identification of unknown adducts, a shortcoming that could significantly hamper progress in the field. Structural methods have since been developed to allow for positive identification of DNA adducts, but to this day, the same level of sensitivity and low sample requirements provided by (32)P-postlabeling have not been matched. In this mini review we will discuss the (32)P-postlabeling method and chronicle the transition to mass spectrometry via the hyphenation of gas chromatography, capillary electrophoresis, and ultimately liquid chromatography which, some 30years later, is only just starting to approach the sensitivity and low sample requirements of (32)P-postlabeling. This paper focuses on the detection of bulky carcinogen-DNA adducts, with no mention of oxidative damage or small alkylating agents. This is because the (32)P-postlabeling assay is most compatible with bulky DNA adducts. This will also allow a more comprehensive focus on a subject that has been our particular interest since 1990.

Indexed as

AnimalsChromatography, High Pressure LiquidDNA AdductsElectrophoresis, CapillaryGas Chromatography-Mass SpectrometryHumansIsotope LabelingMass SpectrometryPhosphorus RadioisotopesSensitivity and SpecificityDNA AdductsPhosphorus Radioisotopes

Identifiers

PMID22960573
PMCPMC3706510

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.