Evidence map›Paper›PMID 22960132›Full record

ArticleArchives of biochemistry and biophysics2012

Acidic pH promotes oligomerization and membrane insertion of the BclXL apoptotic repressor.

Vikas Bhat, Dmitry Kurouski, Max B Olenick, Caleb B McDonald, David C Mikles, Brian J Deegan, Kenneth L Seldeen, Igor K Lednev, Amjad Farooq

Abstract read
In one paragraph

Article in Archives of biochemistry and biophysics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Vikas BhatDepartment of Biochemistry and Molecular Biology, Leonard Miller School of Medicine, University of Miami, Miami, FL 33136, USA.
Dmitry Kurouski
Max B Olenick
Caleb B McDonald
David C Mikles
Brian J Deegan
Kenneth L Seldeen
Igor K Lednev
Amjad Farooq

Funding

Structural and Functional Studies of the Novel DBD Domain of MKP5R01GM083897 · NIGMS · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI FAROOQ, AMJAD · 2008 to 2012
$1.6M
Training in Translational Breast Cancer ResearchT32CA119929 · NCI · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI SLINGERLAND, JOYCE MARIE · 2007 to 2011
$1.4M
Structural Characterization of Amyloid Fibrils Using Deep UV Raman SpectroscopyR01AG033719 · NIA · STATE UNIVERSITY OF NEW YORK AT ALBANY · PI LEDNEV, IGOR K · 2010 to 2014
$1.0M
NCI NIH HHS T32 CA119929NCI NIH HHS T32-CA119929NIA NIH HHS R01 AG033719NIA NIH HHS R01-AG033719NIGMS NIH HHS R01 GM083897NIGMS NIH HHS R01-GM083897
6 · The paper itself

Abstract

Solution pH is believed to serve as an intricate regulatory switch in the induction of apoptosis central to embryonic development and cellular homeostasis. Herein, using an array of biophysical techniques, we provide evidence that acidic pH promotes the assembly of BclXL apoptotic repressor into a megadalton oligomer with a plume-like appearance and harboring structural features characteristic of a molten globule. Strikingly, our data reveal that pH tightly modulates not only oligomerization but also ligand binding and membrane insertion of BclXL in a highly subtle manner. Thus, while oligomerization and the accompanying molten globular content of BclXL is least favorable at pH 6, both of these structural features become more pronounced under acidic and alkaline conditions. However, membrane insertion of BclXL appears to be predominantly favored under acidic conditions. In a remarkable contrast, while ligand binding to BclXL optimally occurs at pH 6, it is diminished by an order of magnitude at lower and higher pH. This reciprocal relationship between BclXL oligomerization and ligand binding lends new insights into how pH modulates functional versatility of a key apoptotic regulator and strongly argues that the molten globule may serve as an intermediate primed for membrane insertion in response to apoptotic cues.

Indexed as

bcl-X ProteinCell MembraneHumansHydrogen-Ion ConcentrationLigandsMolecular Dynamics SimulationProtein BindingProtein ConformationProtein FoldingProtein MultimerizationProtein Stabilitybcl-X ProteinLigands

Identifiers

PMID22960132
PMCPMC3483416

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.