Evidence map›Paper›PMID 22960038›Full record

ArticleDevelopmental biology2013

Teleost growth factor independence (gfi) genes differentially regulate successive waves of hematopoiesis.

Jeffrey D Cooney, Gordon J Hildick-Smith, Ebrahim Shafizadeh, Paul F McBride, Kelli J Carroll, Heidi Anderson, George C Shaw, Owen J Tamplin, Diana S Branco, Arthur J Dalton and 6 more

Abstract read
In one paragraph

Article in Developmental biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 4 institutions in 1 country.

Jeffrey D CooneyDepartment of Medicine, Division of Hematology, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts 02115, USA.
Gordon J Hildick-Smith
Ebrahim Shafizadeh
Paul F McBride
Kelli J Carroll
Heidi Anderson
George C Shaw
Owen J Tamplin
Diana S Branco
Arthur J Dalton
Dhvanit I Shah
Clara Wong
Patrick G Gallagher
Leonard I Zon
Trista E North
Barry H Paw
Brigham and Women's Hospital · USBeth Israel Deaconess Medical Center · USBoston Children's Hospital · USYale University · US

Funding

TRANSCRIPTION FACTOR GATA-1 IN TERMINAL ERYTHROID DEVELOPMENTP01HL032262 · NHLBI · CHILDREN'S HOSPITAL BOSTON · PI BAUER, DANIEL EVAN · 1985 to 2021
$38.9M
CORE--ZEBRAFISHP30DK049216 · NIDDK · CHILDREN'S HOSPITAL BOSTON · PI ORKIN, STUART H · 1999 to 2015
$14.3M
TRAINING PROGRAM IN MOLECULAR HEMATOLOGYT32HL007623 · NHLBI · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI HANDIN, ROBERT I · 1985 to 2010
$7.0M
EMBRYONIC HEMATOPOIESISR01HL048801 · NHLBI · CHILDREN'S HOSPITAL BOSTON · PI ZON, LEONARD IRA · 1992 to 2016
$5.7M
Frascati: mitochondrial transporter and erythropoiesisR01DK070838 · NIDDK · BRIGHAM AND WOMEN'S HOSPITAL · PI PAW, BARRY H · 2007 to 2011
$1.8M
Zebrafish Genetics to Identify Genes Involved in HematopoiesisK01DK085217 · NIDDK · BRIGHAM AND WOMEN'S HOSPITAL · PI SHAH, DHVANIT INDRAVADAN · 2010 to 2014
$794k
Characterization of regulators of hemotopoietic stem cell homeostasisK01DK080226 · NIDDK · BETH ISRAEL DEACONESS MEDICAL CENTER · PI NORTH, TRISTA E. · 2009 to 2013
$713k
CIHRHoward Hughes Medical InstituteNHLBI NIH HHS P01 HL032262NHLBI NIH HHS P01HL032262NHLBI NIH HHS R01 HL048801NHLBI NIH HHS T32 HL007623NHLBI NIH HHS T32HL07623NIDDK NIH HHS K01 DK085217NIDDK NIH HHS K01DK085217NIDDK NIH HHS P30 DK049216NIDDK NIH HHS R01 DK070838NIDDK NIH HHS R01DK070838
6 · The paper itself

Abstract

Growth Factor Independence (Gfi) transcription factors play essential roles in hematopoiesis, differentially activating and repressing transcriptional programs required for hematopoietic stem/progenitor cell (HSPC) development and lineage specification. In mammals, Gfi1a regulates hematopoietic stem cells (HSC), myeloid and lymphoid populations, while its paralog, Gfi1b, regulates HSC, megakaryocyte and erythroid development. In zebrafish, gfi1aa is essential for primitive hematopoiesis; however, little is known about the role of gfi1aa in definitive hematopoiesis or about additional gfi factors in zebrafish. Here, we report the isolation and characterization of an additional hematopoietic gfi factor, gfi1b. We show that gfi1aa and gfi1b are expressed in the primitive and definitive sites of hematopoiesis in zebrafish. Our functional analyses demonstrate that gfi1aa and gfi1b have distinct roles in regulating primitive and definitive hematopoietic progenitors, respectively. Loss of gfi1aa silences markers of early primitive progenitors, scl and gata1. Conversely, loss of gfi1b silences runx-1, c-myb, ikaros and cd41, indicating that gfi1b is required for definitive hematopoiesis. We determine the epistatic relationships between the gfi factors and key hematopoietic transcription factors, demonstrating that gfi1aa and gfi1b join lmo2, scl, runx-1 and c-myb as critical regulators of teleost HSPC. Our studies establish a comparative paradigm for the regulation of hematopoietic lineages by gfi transcription factors.

Indexed as

Gene Expression Regulation, DevelopmentalAmino Acid SequenceAnimalsCloning, MolecularConserved SequenceDNA-Binding ProteinsEmbryo, NonmammalianEpistasis, GeneticErythropoiesisEvolution, MolecularHematopoiesisHematopoietic Stem CellsHematopoietic SystemModels, BiologicalMolecular Sequence DataZebrafishDNA-Binding Proteinsgfi1ab protein, zebrafishZebrafish Proteins

Identifiers

PMID22960038
PMCPMC3532562
OpenAlexW2146059974

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.