Evidence map›Paper›PMID 22957047›Full record

ArticlePloS one2012

Transposable elements in TDP-43-mediated neurodegenerative disorders.

Wanhe Li, Ying Jin, Lisa Prazak, Molly Hammell, Josh Dubnau

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 127 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
127citing papers in PubMed, 1 pooled it
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

127 citing papers in PubMed, 1 synthesis or guideline pooled it, 201 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Review
  4. Article
  5. LINE-1 Retrotransposons and Amyotrophic Lateral Sclerosis.International journal of molecular sciences · 2026
    Review
  6. Article
  7. Article
  8. Article
  9. Review
  10. Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Review
  19. Review
  20. TDP-43 Epigenetic Facets and Their Neurodegenerative Implications.International journal of molecular sciences · 2023
    Review

67 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Wanhe LiGraduate Program in Molecular and Cellular Biology, Stony Brook University, Stony Brook, New York, United States of America.
Ying Jin
Lisa Prazak
Molly Hammell
Josh Dubnau
Cold Spring Harbor Laboratory · US

Funding

Genome-wide regulatory network governing neuronal mRNA translation.R01NS067690 · NINDS · COLD SPRING HARBOR LABORATORY · PI DUBNAU, JOSHUA T · 2009 to 2013
$2.2M
NINDS NIH HHS R01 NS067690NINDS NIH HHS TR01 5R01NS067690-03
6 · The paper itself

Abstract

Elevated expression of specific transposable elements (TEs) has been observed in several neurodegenerative disorders. TEs also can be active during normal neurogenesis. By mining a series of deep sequencing datasets of protein-RNA interactions and of gene expression profiles, we uncovered extensive binding of TE transcripts to TDP-43, an RNA-binding protein central to amyotrophic lateral sclerosis (ALS) and frontotemporal lobar degeneration (FTLD). Second, we find that association between TDP-43 and many of its TE targets is reduced in FTLD patients. Third, we discovered that a large fraction of the TEs to which TDP-43 binds become de-repressed in mouse TDP-43 disease models. We propose the hypothesis that TE mis-regulation contributes to TDP-43 related neurodegenerative diseases.

Indexed as

DNA Transposable ElementsAnimalsCase-Control StudiesDNA-Binding ProteinsFrontal LobeGene Expression ProfilingGenomeHumansMiceModels, StatisticalMolecular Sequence DataNeurodegenerative DiseasesNeuronsProtein BindingRatsRNADNA-Binding ProteinsDNA Transposable ElementsRNA

Identifiers

PMID22957047
PMCPMC3434193
OpenAlexW2023453519

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.