ArticleMolecular & cellular proteomics : MCP2012
File formats commonly used in mass spectrometry proteomics.
Article in Molecular & cellular proteomics : MCP, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.
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Who cites it
41 citing papers in PubMed.
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- LCMSpector: A simple open-source viewer for targeted hyphenated mass spectrometry analysis.PLoS computational biology · 2025Article
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- Review
- Comprehensive Overview of Bottom-Up Proteomics Using Mass Spectrometry.ACS measurement science au · 2024Review
- arcMS: transformation of multi-dimensional high-resolution mass spectrometry data to columnar format for compact storage and fast access.Bioinformatics advances · 2024Article
- Article
- Trans-Proteomic Pipeline: Robust Mass Spectrometry-Based Proteomics Data Analysis Suite.Journal of proteome research · 2023Article
- Comprehensive evaluation of peptide de novo sequencing tools for monoclonal antibody assembly.Briefings in bioinformatics · 2023Article
- FindPFΔS: Non-Target Screening for PFAS─Comprehensive Data Mining for MSAnalytical chemistry · 2022Article
- Inter-laboratory mass spectrometry dataset based on passive sampling of drinking water for non-target analysis.Scientific data · 2021Article
- Software Options for the Analysis of MS-Proteomic Data.Methods in molecular biology (Clifton, N.J.) · 2021Article
- Bottom-Up Community Proteome Analysis of Saliva Samples and Tongue Swabs by Data-Dependent Acquisition Nano LC-MS/MS Mass Spectrometry.Methods in molecular biology (Clifton, N.J.) · 2021Article
- Shotgun proteomics of Brassica rapa seed proteins identifies vicilin as a major seed storage protein in the mature seed.PloS one · 2021Article
- Multi-omics Visualization Platform: An extensible Galaxy plug-in for multi-omics data visualization and exploration.GigaScience · 2020Article
- PROTEOFORMER 2.0: Further Developments in the Ribosome Profiling-assisted Proteogenomic Hunt for New Proteoforms.Molecular & cellular proteomics : MCP · 2019Article
- SPECTRUM - A MATLAB Toolbox for Proteoform Identification from Top-Down Proteomics Data.Scientific reports · 2019Article
- Proteomics Standards Initiative Extended FASTA Format.Journal of proteome research · 2019Article
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Abstract
The application of mass spectrometry (MS) to the analysis of proteomes has enabled the high-throughput identification and abundance measurement of hundreds to thousands of proteins per experiment. However, the formidable informatics challenge associated with analyzing MS data has required a wide variety of data file formats to encode the complex data types associated with MS workflows. These formats encompass the encoding of input instruction for instruments, output products of the instruments, and several levels of information and results used by and produced by the informatics analysis tools. A brief overview of the most common file formats in use today is presented here, along with a discussion of related topics.
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