Evidence map›Paper›PMID 22956355›Full record

ArticleExtremophiles : life under extreme conditions2012

Screening of anaerobic activities in sediments of an acidic environment: Tinto River.

Irene Sánchez-Andrea, Patricia Rojas-Ojeda, Ricardo Amils, José Luis Sanz

Abstract read
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In one paragraph

Article in Extremophiles : life under extreme conditions, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Long-Chain Fatty Acids Degradation byFrontiers in microbiology · 2020
    Article
  6. Article
  7. Article
  8. Article
  9. Low-Abundance Members of theFrontiers in microbiology · 2018
    Article
  10. Article
  11. Article
  12. Review
  13. Review
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Irene Sánchez-AndreaDepartamento de Biología Molecular, Universidad Autónoma de Madrid, c/Darwin 2, C-014/021, Campus de Cantoblanco, Crtra. de Colmenar, Km. 15, 28049, Madrid, Spain. irenesanchezandrea@hotmail.com
Patricia Rojas-Ojeda
Ricardo Amils
José Luis Sanz

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Tinto River (Huelva, Spain) is a natural acidic rock drainage environment produced by the bio-oxidation of metallic sulfides from the Iberian Pyritic Belt. A geomicrobiological model of the different microbial cycles operating in the sediments was recently developed through molecular biological methods, suggesting the presence of iron reducers, methanogens, nitrate reducers and hydrogen producers. In this study, we used a combination of molecular biological methods and targeted enrichment incubations to validate this model and prove the existence of those potential anaerobic activities in the acidic sediments of Tinto River. Methanogenic, sulfate-reducing, denitrifying and hydrogen-producing enrichments were all positive at pH between 5 and 7. Methanogenic enrichments revealed the presence of methanogenic archaea belonging to the genera Methanosarcina and Methanobrevibacter. Enrichments for sulfate-reducing microorganisms were dominated by Desulfotomaculum spp. Denitrifying enrichments showed a broad diversity of bacteria belonging to the genera Paenibacillus, Bacillus, Sedimentibacter, Lysinibacillus, Delftia, Alcaligenes, Clostridium and Desulfitobacterium. Hydrogen-producing enrichments were dominated by Clostridium spp. These enrichments confirm the presence of anaerobic activities in the acidic sediments of the Tinto River that are normally assumed to take place exclusively at neutral pH.

Indexed as

BiodiversityAnaerobiosisBacteriaBacterial Typing TechniquesBase SequenceDNA, ArchaealDNA, BacterialEcosystemGeologic SedimentsGram-Positive Endospore-Forming BacteriaHydrogen-Ion ConcentrationMethaneMethanobrevibacterMethanosarcinaMolecular Sequence DataNitratesDNA, ArchaealDNA, BacterialMethaneNitratesSulfates

Identifiers

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.