Evidence map›Paper›PMID 22956079›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2012

Xenopus tropicalis as a model organism for genetics and genomics: past, present, and future.

Robert M Grainger

Abstract read
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed.

  1. Article
  2. TheBiomolecules · 2025
    Review
  3. Review
  4. Article
  5. Review
  6. Review
  7. Article
  8. Regulation of organelle size and organization during development.Seminars in cell & developmental biology · 2023
    Review
  9. Article
  10. Review
  11. Tissue disaggregation and isolation of specific cell types from transgenic Xenopus appendages for transcriptional analysis by FACS.Developmental dynamics : an official publication of the American Association of Anatomists · 2021
    Article
  12. Article
  13. Article
  14. Editorial:Frontiers in physiology · 2020
    Article
  15. Advancing genetic and genomic technologies deepen the pool for discovery in Xenopus tropicalis.Developmental dynamics : an official publication of the American Association of Anatomists · 2019
    Review
  16. Article
  17. Frontiers in physiology · 2019
    Review
  18. Article
  19. Article
  20. Xenopus genomic data and browser resources.Developmental biology · 2017
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

1 author.

Robert M GraingerDepartment of Biology, University of Virginia, Charlottesville, VA, USA. rmg9p@virginia.edu

Funding

Resource CoreP40OD010997 · OD · MARINE BIOLOGICAL LABORATORY · PI Marko E Horb · 2012 to 2026
$13.1M
AMPHIBIAN MODEL FOR VERTEBRATE DEVELOPMENTAL GENETICSR01RR013221 · NCRR · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI GRAINGER, ROBERT M · 1998 to 2008
$2.8M
Pediatric Spectral Domain Optical Coherence TomographyR44EY019000 · NEI · BIOPTIGEN, INC. · PI BUCKLAND, ERIC L. · 2011 to 2014
$2.8M
Genetic Control of Early Retinal DevelopmentR01EY017400 · NEI · UNIVERSITY OF VIRGINIA · PI GRAINGER, ROBERT M · 2006 to 2010
$1.8M
Genomic survey of cis-regulatory element function by high-throughput transgenesisR01EY018000 · NEI · UNIVERSITY OF VIRGINIA · PI GRAINGER, ROBERT M · 2009 to 2012
$1.3M
National Xenopus Resource CenterP40RR025867 · NCRR · MARINE BIOLOGICAL LABORATORY · PI GRAINGER, ROBERT M · 2010 to 2011
$1.3M
Development of a TILLING Resource for the Xenopus Research CommunityR21HD065713 · NICHD · UNIVERSITY OF VIRGINIA · PI GRAINGER, ROBERT M · 2010 to 2011
$443k
Bioptigen SBIR Phase I resubmittal: Pediatric OCTR43EY019000 · NEI · BIOPTIGEN, INC. · PI BOWER, BRADLEY A. · 2009 to 2009
$151k
NCRR NIH HHS P40 RR025867NCRR NIH HHS R01 RR013221NCRR NIH HHS RR013221NCRR NIH HHS RR025867NEI NIH HHS EY017400NEI NIH HHS EY019000NEI NIH HHS R01 EY017400NEI NIH HHS R01 EY018000NEI NIH HHS R43 EY019000NEI NIH HHS R44 EY019000NICHD NIH HHS HD065713NICHD NIH HHS R21 HD065713NIH HHS P40 OD010997
6 · The paper itself

Abstract

Xenopus tropicalis was introduced as a model system for genetic, and then genomic research, in the early 1990s, complementing work on the widely used model organism Xenopus laevis. Its shorter generation time and diploid genome has facilitated a number of experimental approaches. It has permitted multigenerational experiments (e.g., preparation of transgenic lines and generation of mutant lines) that have added powerful approaches for research by the Xenopus community. As a diploid animal, its simpler genome was sequenced before X. laevis, and has provided a highly valuable resource indispensable for all Xenopus researchers. As more sophisticated transgenic technologies for manipulating gene expression are developed, and mutations, particularly null mutations, are identified in widely studied genes involved in critical cellular and developmental processes, researchers will increasingly turn to X. tropicalis for definitive analysis of complex genetic pathways. This chapter describes the historical and conceptual development of X. tropicalis as a genetic and genomic model system for higher vertebrate development.

Indexed as

Disease Models, AnimalAnimalsDNA Mutational AnalysisGenomeGenomicsHumansMutagenesisMutationXenopus

Identifiers

PMID22956079
PMCPMC3918953

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.