Evidence map›Paper›PMID 22954223›Full record

ArticleAnnals of the New York Academy of Sciences2012

Gross chromosomal rearrangement mediated by DNA replication in stressed cells: evidence from Escherichia coli.

J M Moore, Hallie Wimberly, P C Thornton, Susan M Rosenberg, P J Hastings

Abstract read
In one paragraph

Article in Annals of the New York Academy of Sciences, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.4field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 5 citations in OpenAlex.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

J M MooreDepartment of Biochemistry and Molecular Biology, Baylor College of Medicine, Houston, Texas, USA.
Hallie Wimberly
P C Thornton
Susan M Rosenberg
P J Hastings
Baylor College of Medicine · US

Funding

MOLECULAR MECHANISMS /STRESS-INDUCED MUTATION /E. COLIR01GM053158 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI ROSENBERG, SUSAN M · 1997 to 2014
$7.4M
Mechanisms of Adaptive AmplificationR01GM064022 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI HASTINGS, PHILIP JOHN · 2001 to 2010
$2.3M
Forward Genomics of Damage Control: An Undiscovered Class of Cancer GenesDP1CA174424 · NCI · BAYLOR COLLEGE OF MEDICINE · PI ROSENBERG, SUSAN M · 2012 to 2013
$1.5M
NCI NIH HHS DP1 CA174424NIGMS NIH HHS R01 GM053158NIGMS NIH HHS R01 GM064022NIGMS NIH HHS R01 GM53158NIGMS NIH HHS R01 GM64022
6 · The paper itself

Abstract

Gross chromosomal rearrangements (GCRs), or changes in chromosome structure, play central roles in evolution and are central to cancer formation and progression. GCRs underlie copy number variation (CNV), and therefore genomic disorders that stem from CNV. We study amplification in Escherichia coli as a model system to understand mechanisms and circumstances of GCR formation. Here, we summarize observations that led us to postulate that GCR occurs by a replicative mechanism as part of activated stress responses. We report that we do not find RecA to be downregulated by stress on a population basis and that constitutive expression of RecA does not inhibit amplification, as would be expected if downregulation of RecA made cells permissive for nonhomologous recombination. Strains deleted for the genes for three proteins that inhibit RecA activity, psiB, dinI, and recX, all show unaltered amplification, suggesting that if they do downregulate RecA indirectly, this activity does not promote amplification.

Indexed as

DNA ReplicationChromosomes, BacterialDNA, BacterialDNA Copy Number VariationsDNA End-Joining RepairEscherichia coliGene AmplificationGene RearrangementPoint MutationStress, PhysiologicalDNA, Bacterial

Identifiers

PMID22954223
PMCPMC3442953
OpenAlexW2031145487

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.