Evidence map›Paper›PMID 22951640›Full record

ArticleDevelopment (Cambridge, England)2012

Zebrafish rest regulates developmental gene expression but not neurogenesis.

Fatma O Kok, Andrew Taibi, Sarah J Wanner, Xiayang Xie, Cara E Moravec, Crystal E Love, Victoria E Prince, Jeff S Mumm, Howard I Sirotkin

Open access · bronzeAbstract read
In one paragraph

Article in Development (Cambridge, England), 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. CoRest1 regulates neurogenesis in a stage-dependent manner.Developmental dynamics : an official publication of the American Association of Anatomists · 2019
    Article
  5. miR-124-3p is a chronic regulator of gene expression after brain injury.Cellular and molecular life sciences : CMLS · 2018
    Article
  6. Zebrafish sin3b mutants are viable but have size, skeletal, and locomotor defects.Developmental dynamics : an official publication of the American Association of Anatomists · 2017
    Article
  7. The Importance of REST for Development and Function of Beta Cells.Frontiers in cell and developmental biology · 2017
    Review
  8. Review
  9. Maternal Rest/Nrsf Regulates Zebrafish Behavior through snap25a/b.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2016
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Facial motor neuron migration advances.Current opinion in neurobiology · 2013
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Fatma O KokDepartment of Neurobiology and Behavior, Stony Brook University, Stony Brook, NY 11794, USA.
Andrew Taibi
Sarah J Wanner
Xiayang Xie
Cara E Moravec
Crystal E Love
Victoria E Prince
Jeff S Mumm
Howard I Sirotkin
Stony Brook University · USUniversity of Chicago · USAugusta University Health · US

Funding

Training Program in Developmental BiologyT32HD055164 · NICHD · UNIVERSITY OF CHICAGO · PI Sally Horne-Badovinac, Paschalis Kratsios · 2008 to 2026
$3.6M
Regionalization of the Vertebrate EndodermR01DK064973 · NIDDK · UNIVERSITY OF CHICAGO · PI PRINCE, VICTORIA E. · 2003 to 2013
$2.9M
New Transgenic Tools for Studying Neural Circuit FormationR21MH083614 · NIMH · AUGUSTA UNIVERSITY · PI MUMM, JEFFREY · 2008 to 2009
$404k
An investigation of guidance mechanisms regulating neuronal migrationF32HD069117 · NICHD · UNIVERSITY OF CHICAGO · PI WANNER, SARAH J. · 2011 to 2013
$172k
Gene Targeting Using Modular Zinc Finger NulceasesR03HD066000 · NICHD · STATE UNIVERSITY NEW YORK STONY BROOK · PI SIROTKIN, HOWARD I · 2011 to 2012
$157k
Regionalization of the Vertebrate EndodermR56DK064973 · NIDDK · UNIVERSITY OF CHICAGO · PI PRINCE, VICTORIA E. · 2008 to 2008
$113k
Targeted Cellular Ablation in Transgenic ZebrafishR43HD047089 · NICHD · LUMINOMICS, INC. · PI MUMM, JEFFREY S. · 2004 to 2004
$107k
NICHD NIH HHS F32 HD069117NICHD NIH HHS HD066000NICHD NIH HHS R03 HD066000NICHD NIH HHS R43 HD047089NICHD NIH HHS T32 HD055164NIDDK NIH HHS DK064973NIDDK NIH HHS R01 DK064973NIDDK NIH HHS R56 DK064973NIMH NIH HHS R21 MH083614
6 · The paper itself

Abstract

The transcriptional repressor Rest (Nrsf) recruits chromatin-modifying complexes to RE1 'silencer elements', which are associated with hundreds of neural genes. However, the requirement for Rest-mediated transcriptional regulation of embryonic development and cell fate is poorly understood. Conflicting views of the role of Rest in controlling cell fate have emerged from recent studies. To address these controversies, we examined the developmental requirement for Rest in zebrafish using zinc-finger nuclease-mediated gene targeting. We discovered that germ layer specification progresses normally in rest mutants despite derepression of target genes during embryogenesis. This analysis provides the first evidence that maternal rest is essential for repression of target genes during blastula stages. Surprisingly, neurogenesis proceeds largely normally in rest mutants, although abnormalities are observed within the nervous system, including defects in oligodendrocyte precursor cell development and a partial loss of facial branchiomotor neuron migration. Mutants progress normally through embryogenesis but many die as larvae (after 12 days). However, some homozygotes reach adulthood and are viable. We utilized an RE1/NRSE transgenic reporter system to dynamically monitor Rest activity. This analysis revealed that Rest is required to repress gene expression in mesodermal derivatives including muscle and notochord, as well as within the nervous system. Finally, we demonstrated that Rest is required for long-term repression of target genes in non-neural tissues in adult zebrafish. Our results point to a broad role for Rest in fine-tuning neural gene expression, rather than as a widespread regulator of neurogenesis or cell fate.

Indexed as

Gene Expression Regulation, DevelopmentalNeurogenesisAnimalsCell MovementRE1-Silencing Transcription FactorRepressor ProteinsTranscription, GeneticZebrafishRE1-Silencing Transcription FactorRepressor Proteins

Identifiers

PMID22951640
PMCPMC3445311
OpenAlexW2088531782

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.