Evidence map›Paper›PMID 22949829›Full record

ArticleInternational journal of molecular sciences2012

Structural and catalytic differences between two FADH(2)-dependent monooxygenases: 2,4,5-TCP 4-monooxygenase (TftD) from Burkholderia cepacia AC1100 and 2,4,6-TCP 4-monooxygenase (TcpA) from Cupriavidus necator JMP134.

Robert P Hayes, Brian N Webb, Arun Kumar Subramanian, Mark Nissen, Andrew Popchock, Luying Xun, ChulHee Kang

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Single-Component and Two-ComponentApplied and environmental microbiology · 2021
    Article
  5. Review
  6. Monooxygenation of aromatic compounds by flavin-dependent monooxygenases.Protein science : a publication of the Protein Society · 2019
    Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Robert P HayesDepartment of Chemistry, Washington State University, Pullman, WA 99164, USA.
Brian N WebbDepartment of Chemistry, Washington State University, Pullman, WA 99164, USA.
Arun Kumar SubramanianDepartment of Chemistry, Washington State University, Pullman, WA 99164, USA.
Mark NissenDepartment of Chemistry, Washington State University, Pullman, WA 99164, USA.
Andrew PopchockSchool of Molecular Biosciences, Washington State University, Pullman, WA 99164, USA.
Luying XunSchool of Molecular Biosciences, Washington State University, Pullman, WA 99164, USA.
ChulHee KangDepartment of Chemistry, Washington State University, Pullman, WA 99164, USA.ORCID 0000-0002-0693-7860
Washington State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

2,4,5-TCP 4-monooxygenase (TftD) and 2,4,6-TCP 4-monooxygenase (TcpA) have been discovered in the biodegradation of 2,4,5-trichlorophenol (2,4,5-TCP) and 2,4,6-trichlorophenol (2,4,6-TCP). TcpA and TftD belong to the reduced flavin adenine dinucleotide (FADH(2))-dependent monooxygenases and both use 2,4,6-TCP as a substrate; however, the two enzymes produce different end products. TftD catalyzes a typical monooxygenase reaction, while TcpA catalyzes a typical monooxygenase reaction followed by a hydrolytic dechlorination. We have previously reported the 3D structure of TftD and confirmed the catalytic residue, His289. Here we have determined the crystal structure of TcpA and investigated the apparent differences in specificity and catalysis between these two closely related monooxygenases through structural comparison. Our computational docking results suggest that Ala293 in TcpA (Ile292 in TftD) is possibly responsible for the differences in substrate specificity between the two monooxygenases. We have also identified that Arg101 in TcpA could provide inductive effects/charge stabilization during hydrolytic dechlorination. The collective information provides a fundamental understanding of the catalytic reaction mechanism and the parameters for substrate specificity. The information may provide guidance for designing bioremediation strategies for polychlorophenols, a major group of environmental pollutants.

Indexed as

Amino Acid SequenceBurkholderia cepaciaCatalysisChlorophenolsCrystallography, X-RayCupriavidus necatorFlavin-Adenine DinucleotideMixed Function OxygenasesModels, MolecularMolecular Sequence DataProtein ConformationSequence Homology, Amino AcidSubstrate Specificity1,5-dihydro-FAD2,4,5-trichlorophenol2,4,6-trichlorophenol2,4,6-trichlorophenol monooxygenasechlorophenol 4-monooxygenaseChlorophenolsFlavin-Adenine DinucleotideMixed Function Oxygenasesbioremediationcrystal structureflavinmonooxygenaseTCPTcpATftD

Identifiers

PMID22949829
PMCPMC3431827
OpenAlexW2167162697

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.