Evidence map›Paper›PMID 22949703›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2012

Geometry sensing by self-organized protein patterns.

Jakob Schweizer, Martin Loose, Mike Bonny, Karsten Kruse, Ingolf Mönch, Petra Schwille

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed.

  1. Mimicking Cellular Membranes With Micropatterned Lipid Bilayers.Chemphyschem : a European journal of chemical physics and physical chemistry · 2026
    Article
  2. 3D pattern formation of a protein-membrane suspension.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  3. Quantum transport in protein chains.Scientific reports · 2025
    Article
  4. Article
  5. Review
  6. Review
  7. Article
  8. Sensing the shape of a cell with reaction diffusion and energy minimization.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  9. Article
  10. Article
  11. Stochasticity and positive feedback enable enzyme kinetics at the membrane to sense reaction size.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  12. Article
  13. Engineering spatiotemporal organization and dynamics in synthetic cells.Wiley interdisciplinary reviews. Nanomedicine and nanobiotechnology · 2021
    Review
  14. Article
  15. Review
  16. Article
  17. Article
  18. Stochastic geometry sensing and polarization in a lipid kinase-phosphatase competitive reaction.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  19. Article
  20. Geometric Effect for Biological Reactors and Biological Fluids.Bioengineering (Basel, Switzerland) · 2018
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Jakob SchweizerBiotechnology Center (BIOTEC), Technische Universität Dresden, Dresden, Germany.
Martin Loose
Mike Bonny
Karsten Kruse
Ingolf Mönch
Petra Schwille

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In the living cell, proteins are able to organize space much larger than their dimensions. In return, changes of intracellular space can influence biochemical reactions, allowing cells to sense their size and shape. Despite the possibility to reconstitute protein self-organization with only a few purified components, we still lack knowledge of how geometrical boundaries affect spatiotemporal protein patterns. Following a minimal systems approach, we used purified proteins and photolithographically patterned membranes to study the influence of spatial confinement on the self-organization of the Min system, a spatial regulator of bacterial cytokinesis, in vitro. We found that the emerging protein pattern responds even to the lateral, two-dimensional geometry of the membrane such that, as in the three-dimensional cell, Min protein waves travel along the longest axis of the membrane patch. This shows that for spatial sensing the Min system does not need to be enclosed in a three-dimensional compartment. Using a computational model we quantitatively analyzed our experimental findings and identified persistent binding of MinE to the membrane as requirement for the Min system to sense geometry. Our results give insight into the interplay between geometrical confinement and biochemical patterns emerging from a nonlinear reaction-diffusion system.

Indexed as

BiochemistryComputer SimulationCytokinesisDiffusionDNA NucleotidyltransferasesEscherichia coliLipid BilayersMicroscopy, ConfocalMicroscopy, FluorescenceModels, BiologicalModels, GeneticModels, TheoreticalOscillometryProteinsSpectrometry, FluorescenceTime FactorsDNA NucleotidyltransferasesLipid Bilayersmin recombinaseProteins

Identifiers

PMID22949703
PMCPMC3458403

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.