Evidence map›Paper›PMID 22949678›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2012

Endogenous viral antigen processing generates peptide-specific MHC class I cell-surface clusters.

Xiuju Lu, James S Gibbs, Heather D Hickman, Alexandre David, Brian P Dolan, Yetao Jin, David M Kranz, Jack R Bennink, Jonathan W Yewdell, Rajat Varma

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 70 citations in OpenAlex.

  1. Quantitative nanoscale imaging shows peptide-MHC I complexes are monomeric and spatially regulated in human dendritic cells.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  2. Article
  3. Review
  4. Article
  5. Dynamic interactome of the MHC I peptide loading complex in human dendritic cells.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  6. Tetraspanin-5-mediated MHC class I clustering is required for optimal CD8 T cell activation.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  7. Article
  8. Homotypic and heterotypicCurrent research in immunology · 2022
    Review
  9. Review
  10. Review
  11. Article
  12. Article
  13. Article
  14. Observational
  15. Article
  16. Engineering Platforms for T Cell Modulation.International review of cell and molecular biology · 2018
    Review
  17. Article
  18. Article
  19. Article
  20. Ligand Nano-cluster Arrays in a Supported Lipid Bilayer.Journal of visualized experiments : JoVE · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Xiuju LuLaboratory of Viral Diseases, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 20892, USA.
James S Gibbs
Heather D Hickman
Alexandre David
Brian P Dolan
Yetao Jin
David M Kranz
Jack R Bennink
Jonathan W Yewdell
Rajat Varma
National Institute of Allergy and Infectious Diseases · USNational Institutes of Health · USCenter for Drug Evaluation and Research · USUniversity of Illinois Urbana-Champaign · US

Funding

Protein Expression and Peptide CoreP01CA097296 · NCI · UNIVERSITY OF CHICAGO · PI SCHREIBER, HANS · 2003 to 2012
$15.0M
Delivery Of Antigens To The MHC Class I Processing PathwayZIAAI000653 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI YEWDELL, JONATHAN W · 2009 to 2015
$2.8M
Processing Of Viral Proteins For T Cell RecognitionZIAAI000542 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI YEWDELL, JONATHAN W · 2009 to 2015
$2.8M
Intramural NIH HHSNCI NIH HHS P01 CA097296
6 · The paper itself

Abstract

Sensitivity is essential in CD8+ T-cell killing of virus-infected cells and tumor cells. Although the affinity of the T-cell receptor (TCR) for antigen is relatively low, the avidity of T cell-antigen-presenting cell interactions is greatly enhanced by increasing the valence of the interaction. It is known that TCRs cluster into protein islands after engaging their cognate antigen (peptides bound to MHC molecules). Here, we show that mouse K(b) class I molecules segregate into preformed, long-lasting (hours) clusters on the antigen-presenting cell surface based on their bound viral peptide. Peptide-specific K(b) clustering occurs when source antigens are expressed by vaccinia or vesicular stomatitis virus, either as proteasome-liberated precursors or free intracellular peptides. By contrast, K(b)-peptide complexes generated by incubating cells with synthetic peptides are extensively intermingled on the cell surface. Peptide-specific complex sorting is first detected in the Golgi complex, and compromised by removing the K(b) cytoplasmic tail. Peptide-specific clustering is associated with increased T-cell sensitivity: on a per-complex basis, endogenous SIINFEKL activates T cells more efficiently than synthetic SIINFEKL, and wild-type K(b) presents endogenous SIINFEKL more efficiently than tailless K(b). We propose that endogenous processing generates peptide-specific clusters of class I molecules to maximize the sensitivity and speed of T-cell immunosurveillance.

Indexed as

AnimalsAntigen PresentationAntigen-Presenting CellsAntigens, Viralbeta 2-MicroglobulinCD8-Positive T-LymphocytesCell LineCytoplasmGolgi ApparatusHistocompatibility Antigens Class IMicePeptidesProteasome Endopeptidase ComplexAntigens, Viralbeta 2-MicroglobulinHistocompatibility Antigens Class IPeptidesProteasome Endopeptidase Complex

Identifiers

PMID22949678
PMCPMC3458372
OpenAlexW2162336390

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.