Evidence map›Paper›PMID 22949553›Full record

ArticleInfection and immunity2012

Lack of lipid A pyrophosphorylation and functional lptA reduces inflammation by Neisseria commensals.

Constance M John, Mingfeng Liu, Nancy J Phillips, Zhijie Yang, Courtney R Funk, Lindsey I Zimmerman, J McLeod Griffiss, Daniel C Stein, Gary A Jarvis

Open access · bronzeAbstract read
In one paragraph

Article in Infection and immunity, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
3.4field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 54 citations in OpenAlex.

  1. Article
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  8. Article
  9. Article
  10. Article
  11. Article
  12. Anti-Virulence Therapeutic Approaches forAntibiotics (Basel, Switzerland) · 2021
    Review
  13. Article
  14. Predominant phosphorylation patterns inJournal of lipid research · 2020
    Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. NovelJournal of lipid research · 2018
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Constance M JohnCenter for Immunochemistry, Veterans Affairs Medical Center, San Francisco, California, USA.
Mingfeng Liu
Nancy J Phillips
Zhijie Yang
Courtney R Funk
Lindsey I Zimmerman
J McLeod Griffiss
Daniel C Stein
Gary A Jarvis
San Francisco VA Medical Center · USUniversity of California, San Francisco · USUniversity of Maryland, College Park · US

Funding

Translational InformaticsP30CA082103 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Jennifer Leigh Clarke · 1999 to 2026
$209.7M
Trichomonas Typing SystemU19AI031496 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI HOBBS, MARCIA METZGAR · 1995 to 2014
$24.9M
YEAST THREONINE &SERINE KINASESP41RR001614 · NCRR · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ORTIZ DE MONTELLANO, PAUL R · 1985 to 2011
$24.1M
Bacterial STI and Innate Immunity in HIV SusceptibilityR01AI063927 · NIAID · NORTHERN CALIFORNIA INSTITUTE RES &EDUC · PI JARVIS, GARY A · 2005 to 2009
$2.9M
A Meningococcal LOS VaccineR01AI053728 · NIAID · NORTHERN CALIFORNIA INSTITUTE RES &EDUC · PI GRIFFISS, JOHN MCLEOD · 2003 to 2009
$2.1M
Risk Factors and Susceptibility in Gonococcal InfectionR01AI065605 · NIAID · NORTHERN CALIFORNIA INSTITUTE/RES/EDU · PI GRIFFISS, JOHN MCLEOD · 2007 to 2011
$2.1M
LIPOOLIGOSACCHARIDE BIOSYNTHESIS IN NEISSERIACEAER01AI024452 · NIAID · UNIVERSITY OF MARYLAND COLLEGE PK CAMPUS · PI STEIN, DANIEL C · 1995 to 2004
$1.3M
Genetic Variation in genes involved in Neisseria gonorrhoeae LOS biosynthesisR01AI073667 · NIAID · UNIV OF MARYLAND, COLLEGE PARK · PI STEIN, DANIEL C · 2009 to 2013
$1.1M
Structural Characterization of Polypeptides, Protein Complexes, OligosaccharidesS10RR029446 · NCRR · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI WITKOWSKA, H. EWA · 2010 to 2010
$1.0M
NCI NIH HHS P30 CA082103NCRR NIH HHS P41 RR001614NCRR NIH HHS P41RR001614NCRR NIH HHS S10 RR029446NCRR NIH HHS S10RR029446-01NIAID NIH HHS 5U19AI031496NIAID NIH HHS AI053728NIAID NIH HHS AI063927NIAID NIH HHS AI065605NIAID NIH HHS AI073667NIAID NIH HHS R01 AI024452NIAID NIH HHS R01 AI053728NIAID NIH HHS R01 AI063927NIAID NIH HHS R01 AI065605NIAID NIH HHS R01 AI073667NIAID NIH HHS U19 AI031496
6 · The paper itself

Abstract

The interaction of the immune system with Neisseria commensals remains poorly understood. We have previously shown that phosphoethanolamine on the lipid A portion of lipooligosaccharide (LOS) plays an important role in Toll-like receptor 4 (TLR4) signaling. For pathogenic Neisseria, phosphoethanolamine is added to lipid A by the phosphoethanolamine transferase specific for lipid A, which is encoded by lptA. Here, we report that Southern hybridizations and bioinformatics analyses of genomic sequences from all eight commensal Neisseria species confirmed that lptA was absent in 15 of 17 strains examined but was present in N. lactamica. Mass spectrometry of lipid A and intact LOS revealed the lack of both pyrophosphorylation and phosphoethanolaminylation in lipid A of commensal species lacking lptA. Inflammatory signaling in human THP-1 monocytic cells was much greater with pathogenic than with commensal Neisseria strains that lacked lptA, and greater sensitivity to polymyxin B was consistent with the absence of phosphoethanolamine. Unlike the other commensals, whole bacteria of two N. lactamica commensal strains had low inflammatory potential, whereas their lipid A had high-level pyrophosphorylation and phosphoethanolaminylation and induced high-level inflammatory signaling, supporting previous studies indicating that this species uses mechanisms other than altering lipid A to support commensalism. A meningococcal lptA deletion mutant had reduced inflammatory potential, further illustrating the importance of lipid A pyrophosphorylation and phosphoethanolaminylation in the bioactivity of LOS. Overall, our results indicate that lack of pyrophosphorylation and phosphoethanolaminylation of lipid A contributes to the immune privilege of most commensal Neisseria strains by reducing the inflammatory potential of LOS.

Indexed as

Blotting, SouthernCells, CulturedComputational BiologyHumansInflammationLipid ANeisseriaPhosphorylationSignal TransductionTandem Mass SpectrometryLipid A

Identifiers

PMID22949553
PMCPMC3486066
OpenAlexW2087041328

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.