Evidence map›Paper›PMID 22948911›Full record

ArticleActa crystallographica. Section D, Biological crystallography2012

Spatial distribution of radiation damage to crystalline proteins at 25-300 K.

Matthew Warkentin, Ryan Badeau, Jesse B Hopkins, Robert E Thorne

Abstract read
In one paragraph

Article in Acta crystallographica. Section D, Biological crystallography, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Separating the effects of temperature and absorbed X-ray dose on unit-cell volume.Acta crystallographica. Section D, Structural biology · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. Solvent flows, conformation changes and lattice reordering in a cold protein crystal.Acta crystallographica. Section D, Structural biology · 2019
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Temperature-dependent radiation sensitivity and order of 70S ribosome crystals.Acta crystallographica. Section D, Biological crystallography · 2014
    Article
  12. Article
  13. Article
  14. Sumner's legacy: a century of urease crystals and recent structural advances.Critical reviews in biochemistry and molecular biology
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Matthew WarkentinPhysics Department, Cornell University, Ithaca, NY 14853, USA.
Ryan Badeau
Jesse B Hopkins
Robert E Thorne

Funding

ZINC FINGER-DNA COMPLEXP41RR001646 · NCRR · CORNELL UNIVERSITY ITHACA · PI CINGOLANI, GINO · 1985 to 2011
$23.8M
New Approaches to Radiation Damage and CryoprotectionR01GM065981 · NIGMS · CORNELL UNIVERSITY ITHACA · PI THORNE, ROBERT E. · 2002 to 2010
$1.8M
NCRR NIH HHS P41 RR001646NCRR NIH HHS RR-01646NIGMS NIH HHS DMR-0225180NIGMS NIH HHS GM065981-05 A1NIGMS NIH HHS R01 GM065981
6 · The paper itself

Abstract

The spatial distribution of radiation damage (assayed by increases in atomic B factors) to thaumatin and urease crystals at temperatures ranging from 25 to 300 K is reported. The nature of the damage changes dramatically at approximately 180 K. Above this temperature the role of solvent diffusion is apparent in thaumatin crystals, as solvent-exposed turns and loops are especially sensitive. In urease, a flap covering the active site is the most sensitive part of the molecule and nearby loops show enhanced sensitivity. Below 180 K sensitivity is correlated with poor local packing, especially in thaumatin. At all temperatures, the component of the damage that is spatially uniform within the unit cell accounts for more than half of the total increase in the atomic B factors and correlates with changes in mosaicity. This component may arise from lattice-level, rather than local, disorder. The effects of primary structure on radiation sensitivity are small compared with those of tertiary structure, local packing, solvent accessibility and crystal contacts.

Indexed as

Crystallography, X-RayEnterobacter aerogenesModels, MolecularProtein Structure, QuaternaryProtein Structure, TertiaryTemperatureUreaseUrease

Identifiers

PMID22948911
PMCPMC3489100

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.