Evidence map›Paper›PMID 22948312›Full record

ArticleThe Journal of biological chemistry2012

A properly configured ring structure is critical for the function of the mitochondrial DNA recombination protein, Mgm101.

Jonathan D Nardozzi, Xiaowen Wang, MacMillan Mbantenkhu, Stephan Wilkens, Xin Jie Chen

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.7field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Review
  6. Mgm101: A double-duty Rad52-like protein.Cell cycle (Georgetown, Tex.) · 2016
    Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Jonathan D NardozziDepartment of Biochemistry and Molecular Biology, State University of New York Upstate Medical University, Syracuse, New York 13210, USA.
Xiaowen Wang
MacMillan Mbantenkhu
Stephan Wilkens
Xin Jie Chen
SUNY Upstate Medical University · US

Funding

STRUCTURE OF THE VACUOLAR ATPASE BY ELECTRON MICROSCOPYR01GM058600 · NIGMS · UPSTATE MEDICAL UNIVERSITY · PI WILKENS, STEPHAN · 1999 to 2020
$4.8M
Ant-induced cell death and human degenerative diseasesR01AG023731 · NIA · UT SOUTHWESTERN MEDICAL CENTER · PI CHEN, XIN JIE · 2005 to 2014
$2.4M
NIA NIH HHS R01 AG023731NIA NIH HHS R01AG023731NIGMS NIH HHS R01 GM058600NIGMS NIH HHS R01GM058600
6 · The paper itself

Abstract

Mgm101 is a Rad52-type recombination protein of bacteriophage origin required for the repair and maintenance of mitochondrial DNA (mtDNA). It forms large oligomeric rings of ∼14-fold symmetry that catalyze the annealing of single-stranded DNAs in vitro. In this study, we investigated the structural elements that contribute to this distinctive higher order structural organization and examined its functional implications. A pair of vicinal cysteines, Cys-216 and Cys-217, was found to be essential for mtDNA maintenance. Mutations to the polar serine, the negatively charged aspartic and glutamic acids, and the hydrophobic amino acid alanine all destabilize mtDNA in vivo. The alanine mutants have an increased propensity of forming macroscopic filaments. In contrast, mutations to aspartic acid drastically destabilize the protein and result in unstructured aggregates with severely reduced DNA binding activity. Interestingly, the serine mutants partially disassemble the Mgm101 rings into smaller oligomers. In the case of the C216S mutant, a moderate increase in DNA binding activity was observed. By using small angle x-ray scattering analysis, we found that Mgm101 forms rings of ∼200 Å diameter in solution, consistent with the structure previously established by transmission electron microscopy. We also found that the C216A/C217A double mutant tends to form broken rings, which likely provide free ends for seeding the growth of the super-stable but functionally defective filaments. Taken together, our data underscore the importance of a delicately maintained ring structure critical for Mgm101 activity. We discuss a potential role of Cys-216 and Cys-217 in regulating Mgm101 function and the repair of damaged mtDNA under stress conditions.

Indexed as

Amino Acid SequenceAmino Acid SubstitutionConserved SequenceDNA-Binding ProteinsDNA DamageDNA, MitochondrialDNA RepairDNA, Single-StrandedElectrophoretic Mobility Shift AssayMitochondrial ProteinsModels, MolecularMolecular Sequence DataOxidative StressProtein BindingProtein MultimerizationProtein Structure, QuaternaryDNA-Binding ProteinsDNA, MitochondrialDNA, Single-StrandedMGM101 protein, S cerevisiaeMitochondrial ProteinsSaccharomyces cerevisiae Proteins

Identifiers

PMID22948312
PMCPMC3481324
OpenAlexW2016618197

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.