Evidence map›Paper›PMID 22948144›Full record

ArticleThe Journal of biological chemistry2012

HCN1 and HCN2 proteins are expressed in cochlear hair cells: HCN1 can form a ternary complex with protocadherin 15 CD3 and F-actin-binding filamin A or can interact with HCN2.

Neeliyath A Ramakrishnan, Marian J Drescher, Khalid M Khan, James S Hatfield, Dennis G Drescher

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed, 2 pooled it
1.6field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 2 syntheses or guidelines pooled it, 40 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Review
  4. eLife · 2024
    Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. HCN Channels Modulators: The Need for Selectivity.Current topics in medicinal chemistry · 2016
    Review
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Neeliyath A RamakrishnanLaboratory of Bio-otology, Department of Otolaryngology, Wayne State University School of Medicine, Detroit, Michigan 48201, USA.
Marian J Drescher
Khalid M Khan
James S Hatfield
Dennis G Drescher
Wayne State University · USKuwait University · KWVeterans Health Administration · US

Funding

IDENTIFICATION OF ACOUSTICO-LATERALIS TRANSMITTERSR01DC000156 · NIDCD · WAYNE STATE UNIVERSITY · PI DRESCHER, DENNIS G · 1989 to 2013
$3.9M
ADENYLYL CYCLASE SIGNALING IN EAR SENSORY EPITHELIAR01DC004076 · NIDCD · WAYNE STATE UNIVERSITY · PI DRESCHER, MARIAN JEAN · 1999 to 2009
$1.8M
NIDCD NIH HHS R01 DC000156NIDCD NIH HHS R01 DC004076
6 · The paper itself

Abstract

A unique coupling between HCN1 and stereociliary tip-link protein protocadherin 15 has been described for a teleost vestibular hair-cell model and mammalian organ of Corti (OC) (Ramakrishnan, N. A., Drescher, M. J., Barretto, R. L., Beisel, K. W., Hatfield, J. S., and Drescher, D. G. (2009) J. Biol. Chem. 284, 3227-3238). We now show that Ca(2+)-dependent interaction of the organ of Corti HCN1 and protocadherin 15 CD3 is mediated by amino-terminal sequence specific to HCN1 and is not replicated by analogous specific peptides for HCN2 or HCN4 nor by amino-terminal sequence conserved across HCN isoforms utilized in channel formation. Furthermore, the HCN1-specific peptide binds both phosphatidylinositol (3,4,5)-trisphosphate and phosphatidylinositol (4,5)-bisphosphate but not phosphatidylinositol 4-phosphate. Singly isolated cochlear inner and outer hair cells express HCN1 transcript, and HCN1 and HCN2 protein is immunolocalized to hair-cell stereocilia by both z-stack confocal and pre-embedding EM immunogold microscopy, with stereociliary tip-link and subcuticular plate sites. Quantitative PCR indicates HCN1/HCN2/HCN3/HCN4 = 9:9:1:89 in OC of the wild-type mouse, with HCN4 protein primarily attributable to inner sulcus cells. A mutant form of HCN1 mRNA and protein is expressed in the OC of an HCN1 mutant, corresponding to a full-length sequence with the in-frame deletion of pore-S6 domains, predicted by construct. The mutant transcript of HCN1 is ∼9-fold elevated relative to wild-type levels, possibly representing molecular compensation, with unsubstantial changes in HCN2, HCN3, and HCN4. Immunoprecipitation protocols indicate alternate interactions of full-length proteins; HCN1 can interact with protocadherin 15 CD3 and F-actin-binding filamin A forming a complex that does not include HCN2, or HCN1 can interact with HCN2 forming a complex without protocadherin 15 CD3 but including F-actin-binding fascin-2.

Indexed as

ActinsAmino Acid SequenceAnimalsBase SequenceBlotting, WesternCadherin Related ProteinsCadherinsContractile ProteinsCyclic Nucleotide-Gated Cation ChannelsFilaminsGene ExpressionHair Cells, AuditoryHyperpolarization-Activated Cyclic Nucleotide-Gated ChannelsIon ChannelsMiceMice, 129 StrainActinsCadherin Related ProteinsCadherinsCDHR15 protein, mouseContractile ProteinsCyclic Nucleotide-Gated Cation ChannelsFilaminsHcn1 protein, mouseHcn1 protein, ratHcn2 protein, mouseHcn2 protein, ratHyperpolarization-Activated Cyclic Nucleotide-Gated ChannelsIon ChannelsMicrofilament ProteinsMultiprotein ComplexesPotassium ChannelsProtein Precursors

Identifiers

PMID22948144
PMCPMC3488041
OpenAlexW2062486088

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.