Evidence map›Paper›PMID 22947878›Full record

ArticleBiophysical journal2012

pH wave-front propagation in the urea-urease reaction.

Magdalena M Wrobel, Tamás Bánsági, Stephen K Scott, Annette F Taylor, Chris O Bounds, Arturo Carranza, John A Pojman

Erratum issuedAbstract read
In one paragraph

Article in Biophysical journal, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

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4 · The record

Corrections and comments

  • Erratum issued
    Carranzo, Arturo [corrected to Carranza, Arturo]
5 · Who and what money

Authors and funding

7 authors.

Magdalena M WrobelSchool of Chemistry, University of Leeds, Leeds, United Kingdom.
Tamás BánságiSchool of Chemistry, University of Leeds, Leeds, United Kingdom.
Stephen K ScottSchool of Chemistry, University of Leeds, Leeds, United Kingdom.
Annette F TaylorSchool of Chemistry, University of Leeds, Leeds, United Kingdom. Electronic address: a.f.taylor@leeds.ac.uk.
Chris O BoundsDepartment of Chemistry, Louisiana State University, Baton Rouge, Louisiana.
Arturo CarranzaDepartment of Chemistry, Louisiana State University, Baton Rouge, Louisiana.
John A PojmanDepartment of Chemistry, Louisiana State University, Baton Rouge, Louisiana.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The urease-catalyzed hydrolysis of urea displays feedback that results in a switch from acid (pH ~3) to base (pH ~9) after a controllable period of time (from 10 to >5000 s). Here we show that the spatially distributed reaction can support pH wave fronts propagating with a speed of the order of 0.1-1 mm min(-1). The experimental results were reproduced qualitatively in reaction-diffusion simulations including a Michaelis-Menten expression for the urease reaction with a bell-shaped rate-pH dependence. However, this model fails to predict that at lower enzyme concentrations, the unstirred reaction does not always support fronts when the well-stirred reaction still rapidly switches to high pH.

Indexed as

Models, ChemicalDiffusionFeedbackHydrogen-Ion ConcentrationHydrolysisKineticsProtein BindingUreaUreaseUreaUrease

Identifiers

PMID22947878
PMCPMC3414887

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.