Evidence map›Paper›PMID 22942719›Full record

ArticleInternational journal of molecular sciences2012

Involvement of disperse repetitive sequences in wheat/rye genome adjustment.

Diana Tomás, Miguel Bento, Wanda Viegas, Manuela Silva

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Diana TomásCentro de Botânica Aplicada à Agricultura, Secção de Genética, Instituto Superior de Agronomia, Technical University of Lisbon, Tapada da Ajuda, Lisboa 1349-017, Portugal.
Miguel BentoCentro de Botânica Aplicada à Agricultura, Secção de Genética, Instituto Superior de Agronomia, Technical University of Lisbon, Tapada da Ajuda, Lisboa 1349-017, Portugal.
Wanda ViegasCentro de Botânica Aplicada à Agricultura, Secção de Genética, Instituto Superior de Agronomia, Technical University of Lisbon, Tapada da Ajuda, Lisboa 1349-017, Portugal.
Manuela SilvaCentro de Botânica Aplicada à Agricultura, Secção de Genética, Instituto Superior de Agronomia, Technical University of Lisbon, Tapada da Ajuda, Lisboa 1349-017, Portugal.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The union of different genomes in the same nucleus frequently results in hybrid genotypes with improved genome plasticity related to both genome remodeling events and changes in gene expression. Most modern cereal crops are polyploid species. Triticale, synthesized by the cross between wheat and rye, constitutes an excellent model to study polyploidization functional implications. We intend to attain a deeper knowledge of dispersed repetitive sequence involvement in parental genome reshuffle in triticale and in wheat-rye addition lines that have the entire wheat genome plus each rye chromosome pair. Through Random Amplified Polymorphic DNA (RAPD) analysis with OPH20 10-mer primer we unraveled clear alterations corresponding to the loss of specific bands from both parental genomes. Moreover, the sequential nature of those events was revealed by the increased absence of rye-origin bands in wheat-rye addition lines in comparison with triticale. Remodeled band sequencing revealed that both repetitive and coding genome domains are affected in wheat-rye hybrid genotypes. Additionally, the amplification and sequencing of pSc20H internal segments showed that the disappearance of parental bands may result from restricted sequence alterations and unraveled the involvement of wheat/rye related repetitive sequences in genome adjustment needed for hybrid plant stabilization.

Indexed as

Evolution, MolecularGenetic MarkersGenome, PlantPhylogenyRandom Amplified Polymorphic DNA TechniqueRepetitive Sequences, Nucleic AcidSecaleSequence Analysis, DNATriticumGenetic Markersdispersed repetitive sequencesgenome adjustmentpSc20Htriticalewheat-rye addition lines

Identifiers

PMID22942719
PMCPMC3430250

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.