Evidence map›Paper›PMID 22942687›Full record

ArticleInternational journal of molecular sciences2012

High resolution crystal structures of the Cerebratulus lacteus mini-Hb in the unligated and carbomonoxy states.

Francesca Germani, Alessandra Pesce, Andrea Venturini, Luc Moens, Martino Bolognesi, Sylvia Dewilde, Marco Nardini

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Francesca GermaniDepartment of Biomedical Sciences, University of Antwerp, Universiteitsplein 1, B-2610 Antwerp, Belgium.
Alessandra PesceDepartment of Physics, University of Genova, Via Dodecaneso 33, I-16146 Genova, Italy.
Andrea VenturiniDepartment of Physics, University of Genova, Via Dodecaneso 33, I-16146 Genova, Italy.
Luc MoensDepartment of Biomedical Sciences, University of Antwerp, Universiteitsplein 1, B-2610 Antwerp, Belgium.
Martino BolognesiDipartimento di BioScienze, Università degli Studi di Milano, Via Celoria 26, I-20133 Milano, Italy.ORCID 0000-0002-9253-5170
Sylvia DewildeDepartment of Biomedical Sciences, University of Antwerp, Universiteitsplein 1, B-2610 Antwerp, Belgium.
Marco NardiniDipartimento di BioScienze, Università degli Studi di Milano, Via Celoria 26, I-20133 Milano, Italy.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The nerve tissue mini-hemoglobin from Cerebratulus lacteus (CerHb) displays an essential globin fold hosting a protein matrix tunnel held to allow traffic of small ligands to and from the heme. CerHb heme pocket hosts the distal TyrB10/GlnE7 pair, normally linked to low rates of O(2) dissociation and ultra-high O(2) affinity. However, CerHb affinity for O(2) is similar to that of mammalian myoglobins, due to a dynamic equilibrium between high and low affinity states driven by the ability of ThrE11 to orient the TyrB10 OH group relative to the heme ligand. We present here the high resolution crystal structures of CerHb in the unligated and carbomonoxy states. Although CO binds to the heme with an orientation different from the O(2) ligand, the overall binding schemes for CO and O(2) are essentially the same, both ligands being stabilized through a network of hydrogen bonds based on TyrB10, GlnE7, and ThrE11. No dramatic protein structural changes are needed to support binding of the ligands, which can freely reach the heme distal site through the apolar tunnel. A lack of main conformational changes between the heme-unligated and -ligated states grants stability to the folded mini-Hb and is a prerequisite for fast ligand diffusion to/from the heme.

Indexed as

AnimalsBinding SitesCarbon MonoxideCrystallography, X-RayHemeHemoglobinsHydrogen BondingKineticsModels, MolecularOxygenProtein Structure, SecondaryProtein Structure, TertiaryThermodynamicsCarbon MonoxideHemeHemoglobinsOxygencarbon monoxidecrystal structureheme reactivitynerve globinprotein matrix tunnel

Identifiers

PMID22942687
PMCPMC3430218

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.