Evidence map›Paper›PMID 22942358›Full record

ArticleMolecular & cellular proteomics : MCP2012

Major histocompatibility complex class II+ invariant chain negative breast cancer cells present unique peptides that activate tumor-specific T cells from breast cancer patients.

Olesya Chornoguz, Alexei Gapeev, Michael C O'Neill, Suzanne Ostrand-Rosenberg

Abstract read
In one paragraph

Article in Molecular & cellular proteomics : MCP, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
  2. What do cancer-specific T cells 'see'?Discovery immunology · 2023
    Review
  3. Article
  4. Article
  5. Review
  6. Review
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  12. Review
  13. Article
  14. Review
  15. Review
  16. The human leukocyte antigen-presented ligandome of B lymphocytes.Molecular & cellular proteomics : MCP · 2013
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Olesya ChornoguzDepartment of Biological Sciences, University of Maryland Baltimore County, Baltimore, Maryland, USA.
Alexei Gapeev
Michael C O'Neill
Suzanne Ostrand-Rosenberg

Funding

Graduate Training at The Chemistry Biology InterfaceT32GM066706 · NIGMS · UNIVERSITY OF MARYLAND BALTIMORE COUNTY · PI SELEY-RADTKE, KATHERINE L, SMITH, AARON T · 2004 to 2023
$3.3M
Cell-based tumor vaccines targeting CD4+ T lymphocytesR01CA084232 · NCI · UNIVERSITY OF MARYLAND BALTIMORE COUNTY · PI OSTRAND-ROSENBERG, SUZANNE · 2000 to 2011
$2.6M
Tumor-Induced immune suppressionR01CA115880 · NCI · UNIVERSITY OF MARYLAND BALTIMORE COUNTY · PI OSTRAND-ROSENBERG, SUZANNE · 2006 to 2010
$1.3M
NCI NIH HHS R01 CA084232NCI NIH HHS R01 CA115880NCI NIH HHS R01CA115880NCI NIH HHS R01CA84232NIGMS NIH HHS T32 GM066706NIGMS NIH HHS T32GM 066706
6 · The paper itself

Abstract

The major histocompatibility complex (MHC) class II-associated Invariant chain (Ii) is present in professional antigen presenting cells where it regulates peptide loading onto MHC class II molecules and the peptidome presented to CD4+ T lymphocytes. Because Ii prevents peptide loading in neutral subcellular compartments, we reasoned that Ii- cells may present peptides not presented by Ii+ cells. Based on the hypothesis that patients are tolerant to MHC II-restricted tumor peptides presented by Ii+ cells, but will not be tolerant to novel peptides presented by Ii- cells, we generated MHC II vaccines to activate cancer patients' T cells. The vaccines are Ii- tumor cells expressing syngeneic HLA-DR and the costimulatory molecule CD80. We used liquid chromatography coupled with mass spectrometry to sequence MHC II-restricted peptides from Ii+ and Ii- MCF10 human breast cancer cells transfected with HLA-DR7 or the MHC Class II transactivator CIITA to determine if Ii- cells present novel peptides. Ii expression was induced in the HLA-DR7 transfectants by transfection of Ii, and inhibited in the CIITA transfectants by RNA interference. Peptides were analyzed and binding affinity predicted by artificial neural net analysis. HLA-DR7-restricted peptides from Ii- and Ii+ cells do not differ in size or in subcellular location of their source proteins; however, a subset of HLA-DR7-restricted peptides of Ii- cells are not presented by Ii+ cells, and are derived from source proteins not used by Ii+ cells. Peptides from Ii- cells with the highest predicted HLA-DR7 binding affinity were synthesized, and activated tumor-specific HLA-DR7+ human T cells from healthy donors and breast cancer patients, demonstrating that the MS-identified peptides are bonafide tumor antigens. These results demonstrate that Ii regulates the repertoire of tumor peptides presented by MHC class II+ breast cancer cells and identify novel immunogenic MHC II-restricted peptides that are potential therapeutic reagents for cancer patients.

Indexed as

Amino Acid MotifsAmino Acid SequenceAntigen PresentationAntigen-Presenting CellsAntigens, Differentiation, B-LymphocyteBreast NeoplasmsCancer VaccinesCell Line, TumorFemaleHistocompatibility Antigens Class IIHLA-DR AntigensHumansLymphocyte ActivationMass SpectrometryMolecular Sequence DataPeptidesAntigens, Differentiation, B-LymphocyteCancer VaccinesHistocompatibility Antigens Class IIHLA-DR Antigensinvariant chainPeptides

Identifiers

PMID22942358
PMCPMC3494186

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.