Evidence map›Paper›PMID 22941651›Full record

ArticleNucleic acids research2012

Chromatin modification by SUMO-1 stimulates the promoters of translation machinery genes.

Hui-wen Liu, Jie Zhang, George F Heine, Mansi Arora, Hatice Gulcin Ozer, Raghuram Onti-Srinivasan, Kun Huang, Jeffrey D Parvin

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 71 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Regulation of SUMOylation on RNA metabolism in cancers.Frontiers in molecular biosciences · 2023
    Review
  10. Article
  11. Review
  12. Review
  13. Article
  14. Article
  15. Review
  16. Article
  17. Review
  18. In Vitro SUMOylation Assay to Study SUMO E3 Ligase Activity.Journal of visualized experiments : JoVE · 2018
    Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Hui-wen LiuThe Department of Biomedical Informatics and the Ohio State University Comprehensive Cancer Center, The Ohio State University, Columbus, OH 43210, USA.
Jie Zhang
George F Heine
Mansi Arora
Hatice Gulcin Ozer
Raghuram Onti-Srinivasan
Kun Huang
Jeffrey D Parvin
The Ohio State University · US

Funding

Translational Therapeutics Research Program (TT)P30CA016058 · NCI · OHIO STATE UNIVERSITY · PI Tasleem J Padamsee · 1985 to 2026
$132.3M
Informatics methods for identifying breast cancer control genes and proteinsR01CA141090 · NCI · OHIO STATE UNIVERSITY · PI CATALYUREK, UMIT V., HUANG, KUN · 2009 to 2013
$2.2M
Centrosomes and BRCA1R01CA111480 · NCI · OHIO STATE UNIVERSITY · PI PARVIN, JEFFREY D · 2006 to 2010
$1.2M
Understanding the role of BRCA1 in response to DNA damageF32CA130302 · NCI · OHIO STATE UNIVERSITY · PI HEINE, GEORGE F · 2007 to 2009
$148k
NCI NIH HHS CA111480NCI NIH HHS CA130302NCI NIH HHS CA141090NCI NIH HHS P30 CA016058
6 · The paper itself

Abstract

SUMOylation of transcription factors and chromatin proteins is in many cases a negative mark that recruits factors that repress gene expression. In this study, we determined the occupancy of Small Ubiquitin-like MOdifier (SUMO)-1 on chromatin in HeLa cells by use of chromatin affinity purification coupled with next-generation sequencing. We found SUMO-1 localization on chromatin was dynamic throughout the cell cycle. Surprisingly, we observed that from G1 through late S phase, but not during mitosis, SUMO-1 marks the chromatin just upstream of the transcription start site on many of the most active housekeeping genes, including genes encoding translation factors and ribosomal subunit proteins. Moreover, we found that SUMO-1 distribution on promoters was correlated with H3K4me3, another general chromatin activation mark. Depletion of SUMO-1 resulted in downregulation of the genes that were marked by SUMO-1 at their promoters during interphase, supporting the concept that the marking of promoters by SUMO-1 is associated with transcriptional activation of genes involved in ribosome biosynthesis and in the protein translation process.

Indexed as

Promoter Regions, GeneticTranscriptional ActivationCell CycleChromatinEukaryotic Initiation FactorsHeLa CellsHistonesHumansRibosomal ProteinsSUMO-1 ProteinTranscription, GeneticChromatinEukaryotic Initiation FactorsHistonesRibosomal ProteinsSUMO-1 Protein

Identifiers

PMID22941651
PMCPMC3488252
OpenAlexW2008260297

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.