Evidence map›Paper›PMID 22941364›Full record

ArticleNature methods2012

Coupling endonucleases with DNA end-processing enzymes to drive gene disruption.

Michael T Certo, Kamila S Gwiazda, Ryan Kuhar, Blythe Sather, Gabrielle Curinga, Tyler Mandt, Michelle Brault, Abigail R Lambert, Sarah K Baxter, Kyle Jacoby and 6 more

Abstract read
In one paragraph

Article in Nature methods, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers.

0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed
4.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

63 citing papers in PubMed, 105 citations in OpenAlex.

  1. Article
  2. A modified CRISPR/Cas9 approach in silencing the triplication in Down syndrome: A treatment path XISTs.Proceedings of the National Academy of Sciences of the United States of America · 2026
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  16. Article
  17. CRISPR/Cas-Dependent and Nuclease-FreeHuman gene therapy · 2021
    Review
  18. Review
  19. Article
  20. Article

3 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 4 institutions in 2 countries.

Michael T CertoMolecular and Cellular Biology Program, University of Washington, Seattle, Washington, USA.
Kamila S Gwiazda
Ryan Kuhar
Blythe Sather
Gabrielle Curinga
Tyler Mandt
Michelle Brault
Abigail R Lambert
Sarah K Baxter
Kyle Jacoby
Byoung Y Ryu
Hans-Peter Kiem
Agnes Gouble
Frederic Paques
David J Rawlings
Andrew M Scharenberg
Seattle Children's Hospital · USEpigénétique et Destin Cellulaire · FRUniversity of Washington · USFred Hutch Cancer Center · US

Funding

TRAINING IN MOLECULAR AND CELLULAR BIOLOGYT32GM007270 · NIGMS · UNIVERSITY OF WASHINGTON · PI RAIBLE, DAVID W · 1985 to 2020
$21.0M
ZFN-Modified Stem Cells for HIV EradicationU19AI096111 · NIAID · FRED HUTCHINSON CANCER RESEARCH CENTER · PI JEROME, KEITH R · 2011 to 2015
$20.8M
Cell and Virus COREPL1HL092557 · NHLBI · SEATTLE CHILDREN'S HOSPITAL · PI RAWLINGS, DAVID J · 2007 to 2011
$4.3M
LAGLIDADG Delivery and Gene Repair in Hematopoietic Stem Cells (7 of 11)RL1HL092554 · NHLBI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI KIEM, HANS-PETER · 2007 to 2011
$3.1M
Northwest Genome Engineering Consortium (Component 1 of 11)UL1DE019582 · NIDCR · SEATTLE CHILDREN'S HOSPITAL · PI SCHARENBERG, ANDREW M. · 2008 to 2011
$3.1M
Gene Repair in Murine Hematopoietic Stem Cells (Component 6 of 11)RL1HL092553 · NHLBI · SEATTLE CHILDREN'S HOSPITAL · PI RAWLINGS, DAVID J · 2007 to 2011
$2.3M
Directed Protein Evolution for Design of LAGLIDADGs with Novel Recognition SpeciRL1CA133832 · NCI · SEATTLE CHILDREN'S HOSPITAL · PI SCHARENBERG, ANDREW M. · 2007 to 2011
$2.2M
Lentiviral Gene Therapy of X-linked AgammaglobulinemiaR01HL075453 · NHLBI · SEATTLE CHILDREN'S HOSPITAL · PI RAWLINGS, DAVID J · 2004 to 2008
$1.9M
Northwest Genome Engineering ConsortiumUL1RR024921 · NCRR · SEATTLE CHILDREN'S HOSPITAL · PI SCHARENBERG, ANDREW M · 2007 to 2007
$558k
Engineered nuclease for CCR5 gene editingR41GM085876 · NIGMS · PRECISION GENOME ENGINEERING, INC. · PI SCHARENBERG, ANDREW M. · 2009 to 2009
$101k
NCI NIH HHS RL1 CA133832NCI NIH HHS RL1CA133832NCRR NIH HHS UL1 RR024921NHLBI NIH HHS PL1 HL092557NHLBI NIH HHS PL1-HL092557NHLBI NIH HHS R01 HL075453NHLBI NIH HHS R01-HL075453NHLBI NIH HHS RL1 HL092553NHLBI NIH HHS RL1-HL092553NHLBI NIH HHS RL1 HL092554NHLBI NIH HHS RL1-HL92554NIAID NIH HHS U19 AI096111NIAID NIH HHS U19-AI96111NIDCR NIH HHS UL1 DE019582NIDCR NIH HHS UL1DE019582NIGMS NIH HHS R41 GM085876NIGMS NIH HHS T32 GM007270NIGMS NIH HHS T32 GM07270
6 · The paper itself

Abstract

Targeted DNA double-strand breaks introduced by rare-cleaving designer endonucleases can be harnessed for gene disruption applications by engaging mutagenic nonhomologous end-joining DNA repair pathways. However, endonuclease-mediated DNA breaks are often subject to precise repair, which limits the efficiency of targeted genome editing. To address this issue, we coupled designer endonucleases to DNA end-processing enzymes to drive mutagenic break resolution, achieving up to 25-fold enhancements in gene disruption rates.

Indexed as

DNA Breaks, Double-StrandedAnimalsDNA End-Joining RepairDNA RepairEndonucleasesExodeoxyribonucleasesHEK293 CellsHumansMicePhosphoproteinsReceptors, CCR5EndonucleasesExodeoxyribonucleasesPhosphoproteinsReceptors, CCR5TREX2 protein, human

Identifiers

PMID22941364
PMCPMC3602999
OpenAlexW2081427397

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.