Evidence map›Paper›PMID 22940862›Full record

ArticleNature2012

Interaction landscape of membrane-protein complexes in Saccharomyces cerevisiae.

Mohan Babu, James Vlasblom, Shuye Pu, Xinghua Guo, Chris Graham, Björn D M Bean, Helen E Burston, Franco J Vizeacoumar, Jamie Snider, Sadhna Phanse and 17 more

Abstract read
PubMed Publisher
In one paragraph

Article in Nature, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 128 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
128citing papers in PubMed, 1 pooled it
13.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

128 citing papers in PubMed, 1 synthesis or guideline pooled it, 262 citations in OpenAlex.

  1. Pooled it
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  19. The mechanisms of integral membrane protein biogenesis.Nature reviews. Molecular cell biology · 2022
    Review
  20. The evolving biology of the proton-coupled folate transporter: New insights into regulation, structure, and mechanism.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2022
    Review

68 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

27 authors at 5 institutions in 1 country.

Mohan BabuBanting and Best Department of Medical Research, Donnelly Centre, 160 College Street, University of Toronto, Toronto, Ontario M5S 3E1, Canada.
James Vlasblom
Shuye Pu
Xinghua Guo
Chris Graham
Björn D M Bean
Helen E Burston
Franco J Vizeacoumar
Jamie Snider
Sadhna Phanse
Vincent Fong
Yuen Yi C Tam
Michael Davey
Olha Hnatshak
Navgeet Bajaj
Shamanta Chandran
Thanuja Punna
Constantine Christopolous
Victoria Wong
Analyn Yu
Gouqing Zhong
Joyce Li
Igor Stagljar
Elizabeth Conibear
Shoshana J Wodak
Andrew Emili
Jack F Greenblatt
University of Toronto · CAChild and Family Research Institute · CACanada Research Chairs · CAHospital for Sick Children · CAUniversity of British Columbia · CA

Funding

Canadian Institutes of Health Research MOP 64394Canadian Institutes of Health Research MOP 81156Canadian Institutes of Health Research MOP 82940
6 · The paper itself

Abstract

Macromolecular assemblies involving membrane proteins (MPs) serve vital biological roles and are prime drug targets in a variety of diseases. Large-scale affinity purification studies of soluble-protein complexes have been accomplished for diverse model organisms, but no global characterization of MP-complex membership has been described so far. Here we report a complete survey of 1,590 putative integral, peripheral and lipid-anchored MPs from Saccharomyces cerevisiae, which were affinity purified in the presence of non-denaturing detergents. The identities of the co-purifying proteins were determined by tandem mass spectrometry and subsequently used to derive a high-confidence physical interaction map encompassing 1,726 membrane protein-protein interactions and 501 putative heteromeric complexes associated with the various cellular membrane systems. Our analysis reveals unexpected physical associations underlying the membrane biology of eukaryotes and delineates the global topological landscape of the membrane interactome.

Indexed as

Protein Interaction MapsCell MembraneChitin SynthaseDetergentsEndoplasmic ReticulumGolgi ApparatusMass SpectrometryMembrane ProteinsProtein BindingProtein Interaction MappingProteomeSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsChitin SynthaseCHS3 protein, S cerevisiaeDetergentsMembrane ProteinsProteomeSaccharomyces cerevisiae ProteinsSna2 protein, S cerevisiaeSSP120 protein, S cerevisiae

Identifiers

PMID22940862
OpenAlexW2154136145

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.