Evidence map›Paper›PMID 22939620›Full record

ArticleCell2012

Glucosylated hydroxymethyluracil, DNA base J, prevents transcriptional readthrough in Leishmania.

Henri G A M van Luenen, Carol Farris, Sabrina Jan, Paul-Andre Genest, Pankaj Tripathi, Arno Velds, Ron M Kerkhoven, Marja Nieuwland, Andrew Haydock, Gowthaman Ramasamy and 7 more

Abstract read
In one paragraph

Article in Cell, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 99 papers.

0numbers the graph read from it
0cells of the map it votes in
99citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

99 citing papers in PubMed.

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  11. Molecular Mechanisms of Drug Resistance inPathogens (Basel, Switzerland) · 2024
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  14. Review
  15. Article
  16. The Lasker-Koshland Special Achievement Award in Medical Science awarded to Piet Borst.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  17. Article
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  20. Article

39 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Henri G A M van LuenenDivision of Molecular Biology, The Netherlands Cancer Institute, Plesmanlaan 121, 1066 CX Amsterdam, The Netherlands.
Carol Farris
Sabrina Jan
Paul-Andre Genest
Pankaj Tripathi
Arno Velds
Ron M Kerkhoven
Marja Nieuwland
Andrew Haydock
Gowthaman Ramasamy
Saara Vainio
Tatjana Heidebrecht
Anastassis Perrakis
Ludo Pagie
Bas van Steensel
Peter J Myler
Piet Borst

Funding

Transcription of Protein-coding Genes in LeishmaniaR01AI053667 · NIAID · SEATTLE BIOMEDICAL RESEARCH INSTITUTE · PI MYLER, PETER JOHN · 2003 to 2010
$2.8M
Base J and transcription termination in LeishmaniaR01AI103858 · NIAID · SEATTLE CHILDREN'S HOSPITAL · PI MYLER, PETER JOHN · 2013 to 2017
$2.8M
NIAID NIH HHS R01 AI053667NIAID NIH HHS R01 AI103858
6 · The paper itself

Abstract

Some Ts in nuclear DNA of trypanosomes and Leishmania are hydroxylated and glucosylated to yield base J (β-D-glucosyl-hydroxymethyluracil). In Leishmania, about 99% of J is located in telomeric repeats. We show here that most of the remaining J is located at chromosome-internal RNA polymerase II termination sites. This internal J and telomeric J can be reduced by a knockout of J-binding protein 2 (JBP2), an enzyme involved in the first step of J biosynthesis. J levels are further reduced by growing Leishmania JBP2 knockout cells in BrdU-containing medium, resulting in cell death. The loss of internal J in JBP2 knockout cells is accompanied by massive readthrough at RNA polymerase II termination sites. The readthrough varies between transcription units but may extend over 100 kb. We conclude that J is required for proper transcription termination and infer that the absence of internal J kills Leishmania by massive readthrough of transcriptional stops.

Indexed as

Transcription, GeneticGene Knockout TechniquesGlucosidesLeishmaniaRNA, Double-StrandedRNA Polymerase IIUracil5-((glucopyranosyloxy)methyl)uracilGlucosidesRNA, Double-StrandedRNA Polymerase IIUracil

Identifiers

PMID22939620
PMCPMC3684241

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.