Evidence map›Paper›PMID 22937899›Full record

ArticleBMC microbiology2012

Phylogenetic analysis of a gene cluster encoding an additional, rhizobial-like type III secretion system that is narrowly distributed among Pseudomonas syringae strains.

Anastasia D Gazi, Panagiotis F Sarris, Vasiliki E Fadouloglou, Spyridoula N Charova, Nikolaos Mathioudakis, Nicholas J Panopoulos, Michael Kokkinidis

Open access · goldAbstract read
In one paragraph

Article in BMC microbiology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
5.6field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 59 citations in OpenAlex.

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  8. Structural Insights ofFrontiers in cellular and infection microbiology · 2021
    Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Frontiers in plant science · 2019
    Review
  14. Article
  15. Pseudomonas syringae: what it takes to be a pathogen.Nature reviews. Microbiology · 2018
    Review
  16. Review
  17. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Anastasia D GaziDepartment of Biology, University of Crete, Vasilika Vouton, P,O, Box 2208, Heraklion, Crete GR 71409, Greece.
Panagiotis F Sarris
Vasiliki E Fadouloglou
Spyridoula N Charova
Nikolaos Mathioudakis
Nicholas J Panopoulos
Michael Kokkinidis
University of Crete · GRFoundation for Research and Technology Hellas · GRInstitut Pasteur · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe central role of Type III secretion systems (T3SS) in bacteria-plant interactions is well established, yet unexpected findings are being uncovered through bacterial genome sequencing. Some Pseudomonas syringae strains possess an uncharacterized cluster of genes encoding putative components of a second T3SS (T3SS-2) in addition to the well characterized Hrc1 T3SS which is associated with disease lesions in host plants and with the triggering of hypersensitive response in non-host plants. The aim of this study is to perform an in silico analysis of T3SS-2, and to compare it with other known T3SSs.

resultsBased on phylogenetic analysis and gene organization comparisons, the T3SS-2 cluster of the P. syringae pv. phaseolicola strain is grouped with a second T3SS found in the pNGR234b plasmid of Rhizobium sp. These additional T3SS gene clusters define a subgroup within the Rhizobium T3SS family. Although, T3SS-2 is not distributed as widely as the Hrc1 T3SS in P. syringae strains, it was found to be constitutively expressed in P. syringae pv phaseolicola through RT-PCR experiments.

conclusionsThe relatedness of the P. syringae T3SS-2 to a second T3SS from the pNGR234b plasmid of Rhizobium sp., member of subgroup II of the rhizobial T3SS family, indicates common ancestry and/or possible horizontal transfer events between these species. Functional analysis and genome sequencing of more rhizobia and P. syringae pathovars may shed light into why these bacteria maintain a second T3SS gene cluster in their genome.

Indexed as

Multigene FamilyPhylogenyBacterial Secretion SystemsEvolution, MolecularGene Expression ProfilingGene OrderGene Transfer, HorizontalPlasmidsPseudomonas syringaeReverse Transcriptase Polymerase Chain ReactionRhizobiumSyntenyBacterial Secretion Systems

Identifiers

PMID22937899
PMCPMC3574062
OpenAlexW2046420616

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.