Evidence map›Paper›PMID 22936775›Full record

ArticleScience (New York, N.Y.)2012

A gain-of-function polymorphism controlling complex traits and fitness in nature.

Kasavajhala V S K Prasad, Bao-Hua Song, Carrie Olson-Manning, Jill T Anderson, Cheng-Ruei Lee, M Eric Schranz, Aaron J Windsor, Maria J Clauss, Antonio J Manzaneda, Ibtehaj Naqvi and 5 more

Abstract read
In one paragraph

Article in Science (New York, N.Y.), 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 84 papers.

0numbers the graph read from it
0cells of the map it votes in
84citing papers in PubMed
8.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

84 citing papers in PubMed, 173 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. A large-effect fitness trade-off across environments is explained by a single mutation affecting cold acclimation.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  10. Article
  11. Article
  12. Article
  13. Novel host unmasks heritable variation in plant preference within an insect population.Evolution; international journal of organic evolution · 2022
    Article
  14. Genetics of adaptation.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  15. Genome-wide association mapping within a localPhilosophical transactions of the Royal Society of London. Series B, Biological sciences · 2022
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review

24 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 3 institutions in 2 countries.

Kasavajhala V S K PrasadDepartment of Biology, Institute for Genome Sciences and Policy, Duke University, Durham, NC 27708, USA.
Bao-Hua Song
Carrie Olson-Manning
Jill T Anderson
Cheng-Ruei Lee
M Eric Schranz
Aaron J Windsor
Maria J Clauss
Antonio J Manzaneda
Ibtehaj Naqvi
Michael Reichelt
Jonathan Gershenzon
Sanjeewa G Rupasinghe
Mary A Schuler
Thomas Mitchell-Olds
Duke University · USMax Planck Institute for Chemical Ecology · DEUniversity of Illinois Urbana-Champaign · US

Funding

Molecular Causes and Fitness Consequences of Complex Trait VariationR01GM086496 · NIGMS · DUKE UNIVERSITY · PI MITCHELL-OLDS, STORRS THOMAS · 2008 to 2017
$2.7M
Integrated Theoretical and Experimental Studies of P450 Structure and FunctionR01GM079530 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI SCHULER, MARY A · 2007 to 2010
$2.1M
NIGMS NIH HHS R01 GM079530NIGMS NIH HHS R01-GM079530NIGMS NIH HHS R01 GM086496NIGMS NIH HHS R01-GM086496
6 · The paper itself

Abstract

Identification of the causal genes that control complex trait variation remains challenging, limiting our appreciation of the evolutionary processes that influence polymorphisms in nature. We cloned a quantitative trait locus that controls plant defensive chemistry, damage by insect herbivores, survival, and reproduction in the natural environments where this polymorphism evolved. These ecological effects are driven by duplications in the BCMA (branched-chain methionine allocation) loci controlling this variation and by two selectively favored amino acid changes in the glucosinolate-biosynthetic cytochrome P450 proteins that they encode. These changes cause a gain of novel enzyme function, modulated by allelic differences in catalytic rate and gene copy number. Ecological interactions in diverse environments likely contribute to the widespread polymorphism of this biochemical function.

Indexed as

BrassicaceaeQuantitative Trait, HeritableQuantitative Trait LociSelection, GeneticAllelesAmino Acid SequenceAmino Acid SubstitutionArabidopsisCytochrome P-450 Enzyme SystemGene DosageGene-Environment InteractionGlucosinolatesHerbivoryMethionineMolecular Sequence DataPlant LeavesCytochrome P-450 Enzyme SystemGlucosinolatesMethionine

Identifiers

PMID22936775
PMCPMC3872477
OpenAlexW2157314891

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.