Evidence map›Paper›PMID 22936694›Full record

ArticleHuman molecular genetics2012

Genome-wide association study identifies a new locus JMJD1C at 10q21 that may influence serum androgen levels in men.

Guangfu Jin, Jielin Sun, Seong-Tae Kim, Junjie Feng, Zhong Wang, Sha Tao, Zhuo Chen, Lina Purcell, Shelly Smith, William B Isaacs and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in Human molecular genetics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed, 4 pooled it
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

55 citing papers in PubMed, 4 syntheses or guidelines pooled it, 88 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Pooled it
  5. Article
  6. Overlapping genetic etiology of pediatric and adult germ cell tumors.Journal of the National Cancer Institute · 2026
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  7. Review
  8. Genetic determinants of plasma testosterone in male blood donors are associated with altered red blood cell characteristics and survival in cold storage and after transfusion.Transfusion and apheresis science : official journal of the World Apheresis Association : official journal of the European Society for Haemapheresis · 2024
    Article
  9. Article
  10. Article
  11. Review
  12. Observational
  13. Lrriq1 is an essential factor for fertility by suppressing apoptosis.Journal of assisted reproduction and genetics · 2022
    Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Genetic Variation and Mendelian Randomization Approaches.Advances in experimental medicine and biology · 2022
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 2 countries.

Guangfu JinCenter for Cancer Genomics, Wake Forest University School of Medicine, Winston-Salem, NC 27157, USA.
Jielin Sun
Seong-Tae Kim
Junjie Feng
Zhong Wang
Sha Tao
Zhuo Chen
Lina Purcell
Shelly Smith
William B Isaacs
Roger S Rittmaster
S Lilly Zheng
Lynn D Condreay
Jianfeng Xu
Cancer Genomics Centre · NLWake Forest University · USGlaxoSmithKline (United States) · USJohns Hopkins University · USPCR Oncology · US

Funding

Clinical validity and utility of genomic targeted chemoprevention of PCaRC2CA148463 · NCI · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI XU, JIANFENG · 2009 to 2009
$2.0M
NCI NIH HHS RC2 CA148463
6 · The paper itself

Abstract

Circulating androgen levels are often used as indicators of physiological or pathological conditions. More than half of the variance for circulating androgen levels is thought to be genetically influenced. A genome-wide association study (GWAS) has identified two loci, SHBG at 17p13 and FAM9B at Xp22, for serum testosterone (T) levels; however, these explain only a small fraction of inter-individual variability. To identify additional genetic determinants of androgen levels, a GWAS of baseline serum T and dihydrotestosterone (DHT) levels was conducted in 3225 men of European ancestry from the REduction by DUtasteride of Prostate Cancer Events (REDUCE) study. Cross-validation was used to confirm the observed associations between the drug (n = 1581) and placebo (n = 1644) groups of REDUCE. In addition to confirming the associations of two known loci with serum T levels (rs727428 in SHBG: P = 1.26 × 10(-12); rs5934505 in FAM9B: P = 1.61 × 10(-8)), we identified a new locus, JMJD1C at 10q21 that was associated with serum T levels at a genome-wide significance level (rs10822184: P = 1.12 × 10(-8)). We also observed that the SHBG locus was associated with serum DHT levels (rs727428: P = 1.47 × 10(-11)). Moreover, two additional variants in SHBG [rs72829446, in strong linkage equilibrium with the missense variant D356N (rs6259), and rs1799941] were also independently associated with circulating androgen levels in a statistical scale. These three loci (JMJD1C, SHBG and FAM9B) were estimated to account for ~5.3 and 4.1% of the variance of serum T and DHT levels. Our findings may provide new insights into the regulation of circulating androgens and potential targets for androgen-based therapy.

Indexed as

Chromosomes, Human, Pair 10Genome-Wide Association StudyAgedAndrogensChromosomes, Human, Pair 17Chromosomes, Human, XDihydrotestosteroneGenotypeHumansJumonji Domain-Containing Histone DemethylasesMaleMiddle AgedOxidoreductases, N-DemethylatingPolymorphism, Single NucleotideTestosteroneAndrogensDihydrotestosteroneJMJD1C protein, humanJumonji Domain-Containing Histone DemethylasesOxidoreductases, N-DemethylatingTestosterone

Identifiers

PMID22936694
PMCPMC3607470
OpenAlexW2111241216

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.