Evidence map›Paper›PMID 22936402›Full record

ArticleHuman mutation2013

General olfactory sensitivity database (GOSdb): candidate genes and their genomic variations.

Ifat Keydar, Edna Ben-Asher, Ester Feldmesser, Noam Nativ, Arisa Oshimoto, Diego Restrepo, Hiroaki Matsunami, Ming-Shan Chien, Jayant M Pinto, Yoav Gilad and 2 more

Open access · greenAbstract read
In one paragraph

Article in Human mutation, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.5field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 47 citations in OpenAlex.

  1. Article
  2. Review
  3. Olfactory Dysfunction: Etiology, Diagnosis, and Treatment.Deutsches Arzteblatt international · 2023
    Review
  4. RNAseq analysis of olfactory neuroepithelium cytological samples in individuals with Down syndrome compared to euploid controls: a pilot study.Neurological sciences : official journal of the Italian Neurological Society and of the Italian Society of Clinical Neurophysiology · 2023
    Article
  5. Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Next-generation sequencing of patients with congenital anosmia.European journal of human genetics : EJHG · 2017
    Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 2 countries.

Ifat KeydarDepartment of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel.
Edna Ben-Asher
Ester Feldmesser
Noam Nativ
Arisa Oshimoto
Diego Restrepo
Hiroaki Matsunami
Ming-Shan Chien
Jayant M Pinto
Yoav Gilad
Tsviya Olender
Doron Lancet
Weizmann Institute of Science · ILDuke Medical Center · USRocky Mountain MS Center · USUniversity of Chicago · US

Funding

Genetics Training Grant-Year 26T32GM007754 · NIGMS · DUKE UNIVERSITY · PI HAASE, STEVEN B · 1985 to 2019
$8.3M
NIDCD P30 Core: Rocky Mountain Taste and Smell CenterP30DC004657 · NIDCD · UNIVERSITY OF COLORADO DENVER · PI FINGER, THOMAS E · 2000 to 2014
$7.6M
Multiple Mechanisms of Nasal ChemoreceptionR01DC006070 · NIDCD · UNIVERSITY OF COLORADO DENVER · PI FINGER, THOMAS E, RESTREPO, DIEGO · 2003 to 2012
$5.0M
Molecular Mechanisms Underlying Odorant RecognitionR01DC005782 · NIDCD · DUKE UNIVERSITY · PI MATSUNAMI, HIROAKI · 2002 to 2012
$3.5M
Modulation of Odorant Receptor FunctionR01DC012095 · NIDCD · DUKE UNIVERSITY · PI MATSUNAMI, HIROAKI · 2012 to 2016
$1.8M
Ligand selectivity of vomeronasal receptorsR01DC010857 · NIDCD · DUKE UNIVERSITY · PI MATSUNAMI, HIROAKI · 2010 to 2014
$1.6M
Understanding Susceptibility to Olfactory Decline in AgingK23AG036762 · NIA · UNIVERSITY OF CHICAGO · PI PINTO, JAYANT M · 2012 to 2014
$457k
NIA NIH HHS K23 AG036762NIDCD NIH HHS DC006070NIDCD NIH HHS DC04657NIDCD NIH HHS P30 DC004657NIDCD NIH HHS R01 DC005782NIDCD NIH HHS R01 DC006070NIDCD NIH HHS R01 DC010857NIDCD NIH HHS R01 DC012095NIGMS NIH HHS T32 GM007754
6 · The paper itself

Abstract

Genetic variations in olfactory receptors likely contribute to the diversity of odorant-specific sensitivity phenotypes. Our working hypothesis is that genetic variations in auxiliary olfactory genes, including those mediating transduction and sensory neuronal development, may constitute the genetic basis for general olfactory sensitivity (GOS) and congenital general anosmia (CGA). We thus performed a systematic exploration for auxiliary olfactory genes and their documented variation. This included a literature survey, seeking relevant functional in vitro studies, mouse gene knockouts and human disorders with olfactory phenotypes, as well as data mining in published transcriptome and proteome data for genes expressed in olfactory tissues. In addition, we performed next-generation transcriptome sequencing (RNA-seq) of human olfactory epithelium and mouse olfactory epithelium and bulb, so as to identify sensory-enriched transcripts. Employing a global score system based on attributes of the 11 data sources utilized, we identified a list of 1,680 candidate auxiliary olfactory genes, of which 450 are shortlisted as having higher probability of a functional role. For the top-scoring 136 genes, we identified genomic variants (probably damaging single nucleotide polymorphisms, indels, and copy number deletions) gleaned from public variation repositories. This database of genes and their variants should assist in rationalizing the great interindividual variation in human overall olfactory sensitivity (http://genome.weizmann.ac.il/GOSdb).

Indexed as

Databases, GeneticGenetic VariationAnimalsDNA Copy Number VariationsGenomeHigh-Throughput Nucleotide SequencingHumansINDEL MutationInternetMiceOlfactory BulbOlfactory MucosaPolymorphism, Single NucleotideProteomeReceptors, OdorantSpecies SpecificityProteomeReceptors, Odorant

Identifiers

PMID22936402
PMCPMC3627721
OpenAlexW2052940896

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.