Evidence map›Paper›PMID 22935013›Full record

ArticleAnalytical chemistry2012

Evaluating different fixation protocols for spectral cytopathology, part 2: cultured cells.

Antonella I Mazur, Ellen J Marcsisin, Benjamin Bird, Miloš Miljković, Max Diem

Open access · greenAbstract readEvaluation Study
In one paragraph

Article in Analytical chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
4.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 21 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Antonella I MazurDepartment of Chemistry & Chemical Biology, Northeastern University, 360 Huntington Avenue, Boston, Massachusetts, USA. Antonella.Mazur@gmail.com
Ellen J Marcsisin
Benjamin Bird
Miloš Miljković
Max Diem
Northeastern University · US

Funding

Micro-Spectroscopy for Cytological Screening, and Staging of DiseaseR01CA090346 · NCI · NORTHEASTERN UNIVERSITY · PI DIEM, MAX · 2003 to 2010
$3.2M
Oral Cancer Screening via Spectral CytopathologyR21CA153148 · NCI · NORTHEASTERN UNIVERSITY · PI DIEM, MAX · 2010 to 2011
$367k
NCI NIH HHS CA 090346NCI NIH HHS CA 153148NCI NIH HHS R01 CA090346NCI NIH HHS R21 CA153148
6 · The paper itself

Abstract

Spectral cytopathology (SCP) is a robust and reproducible diagnostic technique that employs infrared spectroscopy and multivariate statistical methods, such as principal component analysis to interrogate unstained cellular samples and discriminate changes on the biochemical level. In the past decade, SCP has taken considerable strides in its application for disease diagnosis. Cultured cell lines have proven to be useful model systems to provide detailed biological information to this field; however, the effects of sample fixation and storage of cultured cells are still not entirely understood in SCP. Conventional cytopathology utilizes fixation and staining methods that have been established and widely accepted for nearly a century and are focused on maintaining the morphology of a cell. Conversely, SCP practices must implement fixation protocols that preserve the sample's biochemical composition and maintain its spectral integrity so not to introduce spectral changes that may mask variance significant to disease. It is not only necessary to evaluate the effects on fixed exfoliated cells but also fixed cultured cells because although they are similar systems, they exhibit distinct differences. We report efforts to study the effects of fixation methodologies commonly used in traditional cytopathology and SCP including both fixed and unfixed routines applied to cultured HeLa cells, an adherent cervical cancer cell line. Data suggest parallel results to findings in Part 1 of this series for exfoliated cells, where the exposure time in fixative and duration of sample storage via desiccation contribute to minor spectral changes only. The results presented here reinforce observations from Part 1 indicating that changes induced by disease are much greater than changes observed as a result of alternate fixation methodologies. Principal component analysis of HeLa cells fixed via the same conditions and protocols as exfoliated cells (Part 1) yield nearly identical results. More importantly, the overall conclusion is that it is necessary that all samples subjected to comparative analysis should be prepared identically because although changes are minute, they are present.

Indexed as

Principal Component AnalysisTissue FixationHeLa CellsHumansSpectrophotometry, InfraredTumor Cells, Cultured

Identifiers

PMID22935013
PMCPMC3463708
OpenAlexW2036936602

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.