Evidence map›Paper›PMID 22933291›Full record

ArticleJournal of virology2012

Temporal association of HLA-B*81:01- and HLA-B*39:10-mediated HIV-1 p24 sequence evolution with disease progression.

R S Ntale, D R Chopera, N K Ngandu, D Assis de Rosa, L Zembe, H Gamieldien, M Mlotshwa, L Werner, Z Woodman, K Mlisana and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed, 1 pooled it
0.7field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 1 synthesis or guideline pooled it, 22 citations in OpenAlex.

  1. Pooled it
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  18. Long term non-progressor (LTNP) HIV infection.The Indian journal of medical research · 2013
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 1 country.

R S NtaleInstitute of Infectious Disease and Molecular Medicine, University of Cape Town, Cape Town, South Africa.
D R Chopera
N K Ngandu
D Assis de Rosa
L Zembe
H Gamieldien
M Mlotshwa
L Werner
Z Woodman
K Mlisana
S Abdool Karim
C M Gray
C Williamson
CAPRISA 002 Study Team
National Health Laboratory Service · ZACentre for the AIDS Programme of Research in South Africa · ZAUniversity of Cape Town · ZANational Institute for Communicable Diseases

Funding

THE ROLE OF CTL ESCAPE MUTATIONS IN ATTENUATING HIV-1 SUBTYPE C INFECTIONR01AI078936 · NIAID · UNIVERSITY OF CAPE TOWN · PI WILLIAMSON, CAROLYN · 2008 to 2011
$322k
NIAID NIH HHS 1R01AI078936NIAID NIH HHS R01 AI078936PHS HHS U19 A151794
6 · The paper itself

Abstract

HLA-B*81:01 and HLA-B*39:10 alleles have been associated with viremic control in HIV-1 subtype C infection. Both alleles restrict the TL9 epitope in p24 Gag, and cytotoxic-T-lymphocyte (CTL)-mediated escape mutations in this epitope have been associated with an in vitro fitness cost to the virus. We investigated the timing and impact of mutations in the TL9 epitope on disease progression in five B*81:01- and two B*39:10-positive subtype C-infected individuals. Whereas both B*39:10 participants sampled at 2 months postinfection had viruses with mutations in the TL9 epitope, in three of the five (3/5) B*81:01 participants, TL9 escape mutations were only detected 10 months after infection, taking an additional 10 to 15 months to reach fixation. In the two remaining B*81:01 individuals, one carried a TL9 escape variant at 2 weeks postinfection, whereas no escape mutations were detected in the virus from the other participant for up to 33 months postinfection, despite CTL targeting of the epitope. In all participants, escape mutations in TL9 were linked to coevolving residues in the region of Gag known to be associated with host tropism. Late escape in TL9, together with coevolution of putative compensatory mutations, coincided with a spontaneous increase in viral loads in two individuals who were otherwise controlling the infection. These results provide in vivo evidence of the detrimental impact of B*81:01-mediated viral evolution, in a single Gag p24 epitope, on the control of viremia.

Indexed as

AllelesCell SeparationDisease ProgressionEpitopesFemaleFlow CytometryGenotypeHIV-1HIV Core Protein p24HIV InfectionsHLA-B AntigensHumansInterferon-gammaKineticsLongitudinal StudiesMolecular Sequence DataEpitopesHIV Core Protein p24HLA-B AntigensInterferon-gammaTLR9 protein, humanToll-Like Receptor 9

Identifiers

PMID22933291
PMCPMC3486481
OpenAlexW2125431977

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.