Evidence map›Paper›PMID 22933278›Full record

ArticleJournal of virology2012

p33-Independent activation of a truncated p92 RNA-dependent RNA polymerase of Tomato bushy stunt virus in yeast cell-free extract.

Judit Pogany, Peter D Nagy

Abstract read
In one paragraph

Article in Journal of virology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Judit PoganyDepartment of Plant Pathology, University of Kentucky, Lexington, Kentucky, USA.
Peter D Nagy

Funding

The role of the host Ca/Mn pump in emergence of novel viral RNA recombinantsR21AI079457 · NIAID · UNIVERSITY OF KENTUCKY · PI NAGY, PETER · 2009 to 2010
$379k
NIAID NIH HHS 5R21AI079457-02NIAID NIH HHS AI05767001A1NIAID NIH HHS R21 AI079457
6 · The paper itself

Abstract

Plus-stranded RNA viruses replicate in membrane-bound structures containing the viral replicase complex (VRC). A key component of the VRC is the virally encoded RNA-dependent RNA polymerase (RdRp), which should be activated and incorporated into the VRC after its translation. To study the activation of the RdRp of Tomato bushy stunt virus (TBSV), a small tombusvirus of plants, we used N-terminal truncated recombinant RdRp, which supported RNA synthesis in a cell-free yeast extract-based assay. The truncated RdRp required a cis-acting RNA replication element and soluble host factors, while unlike the full-length TBSV RdRp, the truncated RdRp did not need the viral p33 replication cofactor or cellular membranes for RNA synthesis. Interestingly, the truncated RdRp used 3'-terminal extension for initiation and terminated prematurely at an internal cis-acting element. However, the truncated RdRp could perform de novo initiation on a TBSV plus-strand RNA template in the presence of the p33 replication cofactor, cellular membranes, and soluble host proteins. Altogether, the data obtained with the truncated RdRp indicate that this RdRp still requires activation, but with the participation of fewer components than with the full-length RdRp, making it suitable for future studies on dissection of the RdRp activation mechanism.

Indexed as

Cell-Free SystemEnzyme ActivationEscherichia coliGenome, ViralMicrococcal NucleaseNucleic Acid ConformationPlasmidsProtein Structure, TertiaryRecombinant ProteinsRibonuclease HRibonuclease, PancreaticRNA-Dependent RNA PolymeraseRNA, ViralTombusvirusViral ProteinsVirus ReplicationMicrococcal NucleaseRecombinant ProteinsRibonuclease HRibonuclease, PancreaticRNA-Dependent RNA PolymeraseRNA, ViralViral Proteins

Identifiers

PMID22933278
PMCPMC3486448

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.