Evidence map›Paper›PMID 22933274›Full record

ArticleJournal of virology2012

Epitope mapping of broadly neutralizing HIV-2 human monoclonal antibodies.

Rui Kong, Hui Li, Ivelin Georgiev, Anita Changela, Frederic Bibollet-Ruche, Julie M Decker, Sarah L Rowland-Jones, Assan Jaye, Yongjun Guan, George K Lewis and 5 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.0field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 27 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 8 institutions in 3 countries.

Rui KongDepartment of Microbiology, University of Alabama at Birmingham, Birmingham, Alabama, USA.
Hui Li
Ivelin Georgiev
Anita Changela
Frederic Bibollet-Ruche
Julie M Decker
Sarah L Rowland-Jones
Assan Jaye
Yongjun Guan
George K Lewis
Johannes P M Langedijk
Beatrice H Hahn
Peter D Kwong
James E Robinson
George M Shaw
University of Pennsylvania · USNational Institutes of Health · USUniversity of Alabama at Birmingham · USUniversity of Maryland, Baltimore · USJohn Radcliffe Hospital · GBMedical Research Council · GBPepscan (Netherlands) · NLTulane University · US

Funding

Viral Sequencing CoreU19AI067854 · NIAID · DUKE UNIVERSITY · PI HAYNES, BARTON F. · 2006 to 2011
$290.5M
Neutralization Mechanisms Of Anti-HIV-1 Monoclonal AntibodiesZIAAI005022 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI ZHOU, TONGQING · 2009 to 2025
$24.6M
Viral and Host Determinants of HIV-1 TransmissionU01AI067854 · NIAID · DUKE UNIVERSITY · PI DOLIN, RAPHAEL · 2005 to 2005
$14.9M
Novel SIVsmm strains for analysis of mucosal transmission and vaccine protectionP01AI088564 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI HAHN, BEATRICE H · 2010 to 2014
$12.7M
Penile transmission and neutralization of pathogenic SIVsmmR01AI094604 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI SHAW, GEORGE M · 2011 to 2015
$3.6M
Broadly Neutralizing Monoclonal Antibodies Against HIV-1R01AI087181 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE · PI LEWIS, GEORGE K · 2010 to 2014
$2.7M
Cloning, characterization and in vivo testing of mucosally transmitted SIVR33AI087383 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI SHAW, GEORGE M · 2013 to 2015
$1.4M
Broad Neutralizing Monoclonal Antibodies From HIV ControllersR01AI084830 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE · PI LEWIS, GEORGE K · 2009 to 2010
$851k
Cloning, characterization and in vivo testing of mucosally transmitted SIVR21AI087383 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI SHAW, GEORGE M · 2010 to 2011
$413k
Intramural NIH HHSMedical Research Council G0801751Medical Research Council MC_U137884180Medical Research Council MC_UP_A900_1121NIAID NIH HHS AI67854NIAID NIH HHS AI87383NIAID NIH HHS AI88564NIAID NIH HHS P01 AI088564NIAID NIH HHS R01 AI084830NIAID NIH HHS R01 AI087181NIAID NIH HHS R01 AI094604NIAID NIH HHS R21 AI087383NIAID NIH HHS R33 AI087383NIAID NIH HHS U01 AI067854NIAID NIH HHS U19 AI067854
6 · The paper itself

Abstract

Recent studies have shown that natural infection by HIV-2 leads to the elicitation of high titers of broadly neutralizing antibodies (NAbs) against primary HIV-2 strains (T. I. de Silva, et al., J. Virol. 86:930-946, 2012; R. Kong, et al., J. Virol. 86:947-960, 2012; G. Ozkaya Sahin, et al., J. Virol. 86:961-971, 2012). Here, we describe the envelope (Env) binding and neutralization properties of 15 anti-HIV-2 human monoclonal antibodies (MAbs), 14 of which were newly generated from 9 chronically infected subjects. All 15 MAbs bound specifically to HIV-2 gp120 monomers and neutralized heterologous primary virus strains HIV-2(7312A) and HIV-2(ST). Ten of 15 MAbs neutralized a third heterologous primary virus strain, HIV-2(UC1). The median 50% inhibitory concentrations (IC(50)s) for these MAbs were surprisingly low, ranging from 0.007 to 0.028 μg/ml. Competitive Env binding studies revealed three MAb competition groups: CG-I, CG-II, and CG-III. Using peptide scanning, site-directed mutagenesis, chimeric Env constructions, and single-cycle virus neutralization assays, we mapped the epitope of CG-I antibodies to a linear region in variable loop 3 (V3), the epitope of CG-II antibodies to a conformational region centered on the carboxy terminus of V4, and the epitope(s) of CG-III antibodies to conformational regions associated with CD4- and coreceptor-binding sites. HIV-2 Env is thus highly immunogenic in vivo and elicits antibodies having diverse epitope specificities, high potency, and wide breadth. In contrast to the HIV-1 Env trimer, which is generally well shielded from antibody binding and neutralization, HIV-2 is surprisingly vulnerable to broadly reactive NAbs. The availability of 15 human MAbs targeting diverse HIV-2 Env epitopes can facilitate comparative studies of HIV/SIV Env structure, function, antigenicity, and immunogenicity.

Indexed as

Amino Acid SequenceAntibodies, MonoclonalAntibodies, NeutralizingBiotinylationEnzyme-Linked Immunosorbent AssayEpitope MappingEpitopesHIV-2HIV AntibodiesHIV InfectionsHumansModels, MolecularMolecular Sequence DataMutagenesis, Site-DirectedMutationNeutralization TestsAntibodies, MonoclonalAntibodies, NeutralizingEpitopesHIV AntibodiesPeptides

Identifiers

PMID22933274
PMCPMC3486499
OpenAlexW2024320790

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.