Evidence map›Paper›PMID 22930756›Full record

ArticleThe Journal of biological chemistry2012

Structure of a proteasome Pba1-Pba2 complex: implications for proteasome assembly, activation, and biological function.

Beth M Stadtmueller, Erik Kish-Trier, Katherine Ferrell, Charisse N Petersen, Howard Robinson, David G Myszka, Debra M Eckert, Tim Formosa, Christopher P Hill

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 63 citations in OpenAlex.

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  16. How to build a proteasome.Nature structural & molecular biology · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Beth M StadtmuellerDepartment of Biochemistry, University of Utah School of Medicine, Salt Lake City, Utah 84112-5650, USA.
Erik Kish-Trier
Katherine Ferrell
Charisse N Petersen
Howard Robinson
David G Myszka
Debra M Eckert
Tim Formosa
Christopher P Hill
University of Utah · USBrookhaven National Laboratory · US

Funding

Case Center for Synchrotron BiosciencesP30EB009998 · NIBIB · CASE WESTERN RESERVE UNIVERSITY · PI CHANCE, MARK R · 2009 to 2018
$8.4M
Structures of Proteasome ActivatorsR01GM059135 · NIGMS · UNIVERSITY OF UTAH · PI HILL, CHRISTOPHER P. · 1999 to 2012
$3.4M
Structure and function of proteasome biogenesis associated proteins 1 and 2F32GM099195 · NIGMS · UNIVERSITY OF UTAH · PI KISH-TRIER, ERIK · 2011 to 2013
$91k
NCI NIH HHS T32CA092347NIBIB NIH HHS P30 EB009998NIGMS NIH HHS F32 GM099195NIGMS NIH HHS R01 GM059135NIGMS NIH HHS R01 GM59135
6 · The paper itself

Abstract

The 20S proteasome is an essential, 28-subunit protease that sequesters proteolytic sites within a central chamber, thereby repressing substrate degradation until proteasome activators open the entrance/exit gate. Two established activators, Blm10 and PAN/19S, induce gate opening by binding to the pockets between proteasome α-subunits using C-terminal HbYX (hydrophobic-tyrosine-any residue) motifs. Equivalent HbYX motifs have been identified in Pba1 and Pba2, which function in proteasome assembly. Here, we demonstrate that Pba1-Pba2 proteins form a stable heterodimer that utilizes its HbYX motifs to bind mature 20S proteasomes in vitro and that the Pba1-Pba2 HbYX motifs are important for a physiological function of proteasomes, the maintenance of mitochondrial function. Other factors that contribute to proteasome assembly or function also act in the maintenance of mitochondrial function and display complex genetic interactions with one another, possibly revealing an unexpected pathway of mitochondrial regulation involving the Pba1-Pba2 proteasome interaction. Our determination of a proteasome Pba1-Pba2 crystal structure reveals a Pba1 HbYX interaction that is superimposable with those of known activators, a Pba2 HbYX interaction that is different from those reported previously, and a gate structure that is disrupted but not sufficiently open to allow entry of even small peptides. These findings extend understanding of proteasome interactions with HbYX motifs and suggest multiple roles for Pba1-Pba2 interactions throughout proteasome assembly and function.

Indexed as

Amino Acid MotifsAmino Acid SequenceCrystallography, X-RayHydrogen BondingImmobilized ProteinsLeupeptinsMitochondriaModels, MolecularMolecular Sequence DataProteasome Endopeptidase ComplexProteasome InhibitorsProtein BindingProtein Interaction Domains and MotifsProtein Structure, QuaternarySaccharomyces cerevisiaeSaccharomyces cerevisiae Proteinsbenzyloxycarbonylleucyl-leucyl-leucine aldehydeImmobilized ProteinsLeupeptinsPba1 protein, S cerevisiaePba2 protein, S cerevisiaeProteasome Endopeptidase ComplexProteasome InhibitorsSaccharomyces cerevisiae Proteins

Identifiers

PMID22930756
PMCPMC3481334
OpenAlexW2061773400

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.