Evidence map›Paper›PMID 22930738›Full record

ArticlePhysiological genomics2012

Genomic analysis of sleep deprivation reveals translational regulation in the hippocampus.

Christopher G Vecsey, Lucia Peixoto, Jennifer H K Choi, Mathieu Wimmer, Devan Jaganath, Pepe J Hernandez, Jennifer Blackwell, Karuna Meda, Alan J Park, Sridhar Hannenhalli and 1 more

Abstract read
In one paragraph

Article in Physiological genomics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 96 papers.

0numbers the graph read from it
0cells of the map it votes in
96citing papers in PubMed
4.7field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

96 citing papers in PubMed, 174 citations in OpenAlex.

  1. Article
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  8. Energy Deficit Is a Key Driver of Sleep Homeostasis.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2025
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  19. Restoration of locus coeruleus noradrenergic transmission during sleep.bioRxiv : the preprint server for biology · 2024
    Article
  20. Article

36 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Christopher G VecseyDepartment of Biology, Brandeis University, Waltham, Massachusetts, USA.
Lucia Peixoto
Jennifer H K Choi
Mathieu Wimmer
Devan Jaganath
Pepe J Hernandez
Jennifer Blackwell
Karuna Meda
Alan J Park
Sridhar Hannenhalli
Ted Abel
University of Pennsylvania · USBrandeis University · USUniversity of Maryland, College Park · US

Funding

University of Pennsylvania Postdoctoral Opportunities in Research and TeachingK12GM081259 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI Janis K. Burkhardt · 2007 to 2026
$20.1M
THE ROLE OF SLEEP IN MEMORY STORAGEP01AG017628 · NIA · UNIVERSITY OF PENNSYLVANIA · PI PACK, ALLAN I · 2001 to 2017
$19.2M
Training in Sleep & Sleep DisordersT32HL007953 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI David Menassah Raizen, AMY M SAWYER · 2000 to 2026
$10.6M
Training Program in Neurodevelopmental DisabilitiesT32NS007413 · NINDS · CHILDREN'S HOSP OF PHILADELPHIA · PI AMELIA J EISCH, ERIC D MARSH · 1998 to 2026
$8.9M
SYSTEMS AND INTEGRATIVE BIOLOGYT32GM007517 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI GOLD, JOSHUA I · 1985 to 2017
$8.0M
Methods for evolutionary analysis of eukaryotic transcriptional regulationR01GM085226 · NIGMS · UNIV OF MARYLAND, COLLEGE PARK · PI HANNENHALLI, SRIDHAR · 2008 to 2011
$1.5M
Probing the Interactions Between Sleep and LearningF32MH090711 · NIMH · BRANDEIS UNIVERSITY · PI VECSEY, CHRISTOPHER GEORGE LORENZ · 2010 to 2012
$153k
NHLBI NIH HHS HL-07953NHLBI NIH HHS T32 HL007953NHLBI NIH HHS T32HL-007953NIA NIH HHS P01 AG017628NIA NIH HHS P50AG-017628NIGMS NIH HHS GM-07517NIGMS NIH HHS K12 GM081259NIGMS NIH HHS K12GM-081259NIGMS NIH HHS R01 GM085226NIGMS NIH HHS R01GM-085226NIGMS NIH HHS T32 GM007517NIMH NIH HHS F32 MH090711NIMH NIH HHS MH-090711NINDS NIH HHS NS-007413NINDS NIH HHS T32 NS007413
6 · The paper itself

Abstract

Sleep deprivation is a common problem of considerable health and economic impact in today's society. Sleep loss is associated with deleterious effects on cognitive functions such as memory and has a high comorbidity with many neurodegenerative and neuropsychiatric disorders. Therefore, it is crucial to understand the molecular basis of the effect of sleep deprivation in the brain. In this study, we combined genome-wide and traditional molecular biological approaches to determine the cellular and molecular impacts of sleep deprivation in the mouse hippocampus, a brain area crucial for many forms of memory. Microarray analysis examining the effects of 5 h of sleep deprivation on gene expression in the mouse hippocampus found 533 genes with altered expression. Bioinformatic analysis revealed that a prominent effect of sleep deprivation was to downregulate translation, potentially mediated through components of the insulin signaling pathway such as the mammalian target of rapamycin (mTOR), a key regulator of protein synthesis. Consistent with this analysis, sleep deprivation reduced levels of total and phosphorylated mTOR, and levels returned to baseline after 2.5 h of recovery sleep. Our findings represent the first genome-wide analysis of the effects of sleep deprivation on the mouse hippocampus, and they suggest that the detrimental effects of sleep deprivation may be mediated by reductions in protein synthesis via downregulation of mTOR. Because protein synthesis and mTOR activation are required for long-term memory formation, our study improves our understanding of the molecular mechanisms underlying the memory impairments induced by sleep deprivation.

Indexed as

GenomicsAnimalsComputational BiologyGene Expression RegulationHippocampusInsulinMaleMemoryMiceMice, Inbred C57BLOligonucleotide Array Sequence AnalysisProtein Array AnalysisProtein BiosynthesisSignal TransductionSleep DeprivationTime FactorsInsulinmTOR protein, mouseTOR Serine-Threonine Kinases

Identifiers

PMID22930738
PMCPMC3472468
OpenAlexW2016469892

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.