Evidence map›Paper›PMID 22930550›Full record

ArticleChemMedChem2012

Inhibition of bacterial dihydrofolate reductase by 6-alkyl-2,4-diaminopyrimidines.

Baskar Nammalwar, Christina R Bourne, Richard A Bunce, Nancy Wakeham, Philip C Bourne, Kal Ramnarayan, Shankari Mylvaganam, K Darrell Berlin, Esther W Barrow, William W Barrow

Abstract read
In one paragraph

Article in ChemMedChem, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. MoSNanoscale advances · 2021
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Baskar NammalwarDepartment of Chemistry, Oklahoma State University, Stillwater, OK 74078 (USA).
Christina R Bourne
Richard A Bunce
Nancy Wakeham
Philip C Bourne
Kal Ramnarayan
Shankari Mylvaganam
K Darrell Berlin
Esther W Barrow
William W Barrow

Funding

XRAY CRYSTALLOGRAPHIC STRUCTURE ANALYSIS: PROTEIN SORTINGP41RR001081 · NCRR · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FERRIN, THOMAS E · 1985 to 2011
$17.6M
Broad-spectrum Antifolates for Treatment of Drug Resistant Bacillus anthracisR01AI090685 · NIAID · OKLAHOMA STATE UNIVERSITY STILLWATER · PI BUNCE, RICHARD A · 2010 to 2014
$3.9M
NCRR NIH HHS P41 RR001081NIAID NIH HHS 1-R01-AI090685-01NIAID NIH HHS R01 AI090685
6 · The paper itself

Abstract

(±)-6-Alkyl-2,4-diaminopyrimidine-based inhibitors of bacterial dihydrofolate reductase (DHFR) have been prepared and evaluated for biological potency against Bacillus anthracis and Staphylococcus aureus. Biological studies revealed attenuated activity relative to earlier structures lacking substitution at C6 of the diaminopyrimidine moiety, though minimum inhibitory concentration (MIC) values are in the 0.125-8 μg mL(-1) range for both organisms. This effect was rationalized from three- dimensional X-ray structure studies that indicate the presence of a side pocket containing two water molecules adjacent to the main binding pocket. Because of the hydrophobic nature of the substitutions at C6, the main interactions are with protein residues Leu 20 and Leu 28. These interactions lead to a minor conformational change in the protein, which opens the pocket containing these water molecules such that it becomes continuous with the main binding pocket. These water molecules are reported to play a critical role in the catalytic reaction, highlighting a new area for inhibitor expansion within the limited architectural variation at the catalytic site of bacterial DHFR.

Indexed as

AnthraxAnti-Bacterial AgentsBacillus anthracisBacterial ProteinsFolic Acid AntagonistsHumansMicrobial Sensitivity TestsModels, MolecularPyrimidinesStaphylococcal InfectionsStaphylococcus aureusTetrahydrofolate Dehydrogenase2,4-diaminopyrimidineAnti-Bacterial AgentsBacterial ProteinsFolic Acid AntagonistsPyrimidinesTetrahydrofolate Dehydrogenase6-alkylpyrimidinesantibioticsBacillus anthracisdihydrofolate reductasesinhibitorsStaphylococcus aureus

Identifiers

PMID22930550
PMCPMC3570588

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.