Evidence map›Paper›PMID 22929757›Full record

ArticleJournal of biological engineering2012

Portable bacterial identification system based on elastic light scatter patterns.

Euiwon Bae, Dawei Ying, Donald Kramer, Valery Patsekin, Bartek Rajwa, Cheryl Holdman, Jennifer Sturgis, V Jo Davisson, J Paul Robinson

Abstract read
In one paragraph

Article in Journal of biological engineering, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Identification of colonies of cultured shellfish-associatedCurrent research in microbial sciences · 2021
    Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Euiwon BaeDr, J, Paul Robinson Purdue University Cytometry Laboratory, Bindley Bioscience Center, Purdue University, 1203 West State Street, Discovery Park, West Lafayette, IN, 47907, USA. jpr@flowcyt.cyto.purdue.edu.
Dawei Ying
Donald Kramer
Valery Patsekin
Bartek Rajwa
Cheryl Holdman
Jennifer Sturgis
V Jo Davisson
J Paul Robinson

Funding

Machine-Learning Approach to Label-free Detection of new Bacterial PathogensR21AI085531 · NIAID · INDIANA UNIVERSITY INDIANAPOLIS · PI DUNDAR, MURAT, RAJWA, BARTLOMIEJ · 2010 to 2011
$383k
NIAID NIH HHS R21 AI085531
6 · The paper itself

Abstract

backgroundConventional diagnosis and identification of bacteria requires shipment of samples to a laboratory for genetic and biochemical analysis. This process can take days and imposes significant delay to action in situations where timely intervention can save lives and reduce associated costs. To enable faster response to an outbreak, a low-cost, small-footprint, portable microbial-identification instrument using forward scatterometry has been developed.

resultsThis device, weighing 9 lb and measuring 12 × 6 × 10.5 in., utilizes elastic light scatter (ELS) patterns to accurately capture bacterial colony characteristics and delivers the classification results via wireless access. The overall system consists of two CCD cameras, one rotational and one translational stage, and a 635-nm laser diode. Various software algorithms such as Hough transform, 2-D geometric moments, and the traveling salesman problem (TSP) have been implemented to provide colony count and circularity, centering process, and minimized travel time among colonies.

conclusionsExperiments were conducted with four bacteria genera using pure and mixed plate and as proof of principle a field test was conducted in four different locations where the average classification rate ranged between 95 and 100%.

Identifiers

PMID22929757
PMCPMC3490744

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.