Evidence map›Paper›PMID 22927778›Full record

ArticleArchaea (Vancouver, B.C.)2012

Acetate activation in Methanosaeta thermophila: characterization of the key enzymes pyrophosphatase and acetyl-CoA synthetase.

Stefanie Berger, Cornelia Welte, Uwe Deppenmeier

Open access · hybridAbstract read
In one paragraph

Article in Archaea (Vancouver, B.C.), 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
5.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 44 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Hydrogen-independent COISME communications · 2024
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Several ways one goal-methanogenesis from unconventional substrates.Applied microbiology and biotechnology · 2020
    Review
  10. Article
  11. Frontiers in microbiology · 2020
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Methanogenic burst in the end-Permian carbon cycle.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  18. Review
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Stefanie BergerInstitute for Microbiology and Biotechnology, University of Bonn, Meckenheimer Allee 168, 53115 Bonn, Germany.
Cornelia Welte
Uwe Deppenmeier
University of Bonn · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The thermophilic methanogen Methanosaeta thermophila uses acetate as sole substrate for methanogenesis. It was proposed that the acetate activation reaction that is needed to feed acetate into the methanogenic pathway requires the hydrolysis of two ATP, whereas the acetate activation reaction in Methanosarcina sp. is known to require only one ATP. As these organisms live at the thermodynamic limit that sustains life, the acetate activation reaction in Mt. thermophila seems too costly and was thus reevaluated. It was found that of the putative acetate activation enzymes one gene encoding an AMP-forming acetyl-CoA synthetase was highly expressed. The corresponding enzyme was purified and characterized in detail. It catalyzed the ATP-dependent formation of acetyl-CoA, AMP, and pyrophosphate (PP(i)) and was only moderately inhibited by PP(i). The breakdown of PP(i) was performed by a soluble pyrophosphatase. This enzyme was also purified and characterized. The pyrophosphatase hydrolyzed the major part of PP(i) (K(M) = 0.27 ± 0.05 mM) that was produced in the acetate activation reaction. Activity was not inhibited by nucleotides or PP(i). However, it cannot be excluded that other PP(i)-dependent enzymes take advantage of the remaining PP(i) and contribute to the energy balance of the cell.

Indexed as

Acetate-CoA LigaseAcetatesAcetyl Coenzyme AAdenosine MonophosphateAdenosine TriphosphateArchaeal ProteinsCloning, MolecularDiphosphatesElectrophoresis, Polyacrylamide GelEnzyme ActivationEnzyme AssaysEscherichia coliGene Expression Regulation, ArchaealGene Expression Regulation, EnzymologicGenes, ArchaealGenetic VectorsAcetate-CoA LigaseAcetatesAcetyl Coenzyme AAdenosine MonophosphateAdenosine TriphosphateArchaeal ProteinsDiphosphatesPyrophosphatases

Identifiers

PMID22927778
PMCPMC3426162
OpenAlexW2165599267

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.