Evidence map›Paper›PMID 22927162›Full record

ArticleChembiochem : a European journal of chemical biology2012

Synthesis and evaluation of a selective fluorogenic Pup derived assay reagent for Dop, a potential drug target in Mycobacterium tuberculosis.

Remco Merkx, Kristin E Burns, Paul Slobbe, Farid El Oualid, Dris El Atmioui, K Heran Darwin, Huib Ovaa

Open access · greenAbstract read
In one paragraph

Article in Chembiochem : a European journal of chemical biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 14 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. mBio · 2017
    Article
  5. Article
  6. Bacterial Proteasomes.Annual review of microbiology · 2015
    Review
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Remco MerkxDivision of Cell Biology, Netherlands Cancer Institute, Plesmanlaan 121, 1066 CX Amsterdam, The Netherlands.
Kristin E Burns
Paul Slobbe
Farid El Oualid
Dris El Atmioui
K Heran Darwin
Huib Ovaa
The Netherlands Cancer Institute · NLNew York University · US

Funding

INFECTIOUS DISEASES &BASIC MICROBIOLOGICAL MECHANISMST32AI007180 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI WEISER, JEFFREY NEAL · 1985 to 2022
$8.9M
PROTEASOME-DEPENDENT DEGRADATION IN MYCOBACTERIUM TUBERCULOSISR01AI088075 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI Katerina Heran Darwin · 2011 to 2026
$6.5M
NIAID NIH HHS AI088075NIAID NIH HHS R01 AI088075NIAID NIH HHS T32 AI007180NIAID NIH HHS T32AI007180
6 · The paper itself

Abstract

A litter of pups: The synthesis and in vitro evaluation of new Pup-based fluorogenic substrates for Dop, the mycobacterial depupylase, are described. A full-length Pup-amidomethylcoumarin conjugate as well as an amino-terminus-truncated analogue exhibited high sensitivity and specificity towards hydrolysis by Dop. The substrates developed here might find application as high-throughput screening assay reagents for the identification of Dop inhibitors.

Indexed as

AmidohydrolasesAmino Acid SequenceBacterial ProteinsBiocatalysisEnzyme InhibitorsFluorescent DyesHigh-Throughput Screening AssaysHydrolysisKineticsMolecular Sequence DataMycobacterium tuberculosisPeptidesSubstrate SpecificityUbiquitinsVirulence FactorsAmidohydrolasesBacterial ProteinsDop protein, Mycobacterium tuberculosisEnzyme InhibitorsFluorescent DyesPeptidesPup protein, Mycobacterium tuberculosisUbiquitinsVirulence Factors

Identifiers

PMID22927162
PMCPMC3474595
OpenAlexW2058666659

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.