Evidence map›Paper›PMID 22925725›Full record

ArticleChemical biology & drug design2012

Discovery of potent, novel Nrf2 inducers via quantum modeling, virtual screening, and in vitro experimental validation.

Tracy P Williamson, Sara Amirahmadi, Gururaj Joshi, Nikola K Kaludov, Martin N Martinov, Delinda A Johnson, Jeffrey A Johnson

Abstract read
In one paragraph

Article in Chemical biology & drug design, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.7field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Frontiers in toxicology · 2023
    Article
  3. Computational toxicology (Amsterdam, Netherlands) · 2021
    Article
  4. Review
  5. Review
  6. Review
  7. Article
  8. Review
  9. Article
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  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Tracy P WilliamsonDivison of Pharmaceutical Sciences, University of Wisconsin, Madison, WI, USA.
Sara Amirahmadi
Gururaj Joshi
Nikola K Kaludov
Martin N Martinov
Delinda A Johnson
Jeffrey A Johnson
University of Wisconsin–Madison · USGradient Biomodeling (United States) · US

Funding

BIOTECHNOLOGY TRAINING PROGRAMT32GM008349 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI FOX, BRIAN G · 1989 to 2019
$22.5M
The Nrf2-ARE pathway in modulating Parkinson's DiseaseR01ES010042 · NIEHS · UNIVERSITY OF WISCONSIN-MADISON · PI JOHNSON, JEFFREY A · 2001 to 2010
$4.0M
Transcriptional Control of Antioxidant Genes in BrainR01ES008089 · NIEHS · UNIVERSITY OF WISCONSIN-MADISON · PI JOHNSON, JEFFREY A · 2002 to 2013
$3.7M
NIEHS NIH HHS R01 ES008089NIEHS NIH HHS R01 ES010042NIEHS NIH HHS R01ES08089NIEHS NIH HHS R01ES10042NIGMS NIH HHS T32 GM008349NIGMS NIH HHS T32GM008349
6 · The paper itself

Abstract

Nuclear factor erythroid 2-related factor 2 (Nrf2) is the master transcription factor of the antioxidant response element pathway, coordinating the induction of detoxifying and antioxidant enzymes. Nrf2 is normally sequestered in the cytoplasm by Kelch-like ECH-associating protein 1 (Keap1). To identify novel small molecules that will disturb Nrf2-Keap1 binding and promote activation of the Nrf2- antioxidant response element pathway, we generated a quantum model based on the structures of known Nrf2- antioxidant response element activators. We used the quantum model to perform in silico screening on over 18 million commercially available chemicals to identify the structures predicted to activate the Nrf2- antioxidant response element pathway based on the quantum model. The top hits were tested in vitro, and half of the predicted hits activated the Nrf2-antioxidant response element pathway significantly in primary cell culture. In addition, we identified a new family of Nrf2-antioxidant response element-activating structures that all have comparable activity to tBHQ and protect against oxidative stress and dopaminergic toxins in vitro. The improved ability to identify potent activators of Nrf2 through the combination of in silico and in vitro screening described here improves the speed and cost associated with screening Nrf2-antioxidant response element -activating compounds for drug development.

Indexed as

AnimalsAntioxidantsAstrocytesCells, CulturedCell SurvivalDrug Evaluation, PreclinicalMiceModels, ChemicalNeuronsNF-E2-Related Factor 2Quantum TheoryResponse ElementsSmall Molecule LibrariesAntioxidantsNF-E2-Related Factor 2Small Molecule Libraries

Identifiers

PMID22925725
PMCPMC3484224
OpenAlexW1482365303

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.