Evidence map›Paper›PMID 22923697›Full record

ArticleDNA research : an international journal for rapid publication of reports on genes and genomes2012

Deciphering the genome of polyphosphate accumulating actinobacterium Microlunatus phosphovorus.

Akatsuki Kawakoshi, Hidekazu Nakazawa, Junji Fukada, Machi Sasagawa, Yoko Katano, Sanae Nakamura, Akira Hosoyama, Hiroki Sasaki, Natsuko Ichikawa, Satoshi Hanada and 4 more

Open access · goldAbstract read
In one paragraph

Article in DNA research : an international journal for rapid publication of reports on genes and genomes, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.8field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 62 citations in OpenAlex.

  1. Article
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    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 2 institutions in 1 country.

Akatsuki KawakoshiBiological Resource Center, National Institute of Technology and Evaluation, 2-10-49 Nishihara, Tokyo 151-0066, Japan.
Hidekazu Nakazawa
Junji Fukada
Machi Sasagawa
Yoko Katano
Sanae Nakamura
Akira Hosoyama
Hiroki Sasaki
Natsuko Ichikawa
Satoshi Hanada
Yoichi Kamagata
Kazunori Nakamura
Shuji Yamazaki
Nobuyuki Fujita
National Institute of Technology and Evaluation · JPNational Institute of Advanced Industrial Science and Technology · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Polyphosphate accumulating organisms (PAOs) belong mostly to Proteobacteria and Actinobacteria and are quite divergent. Under aerobic conditions, they accumulate intracellular polyphosphate (polyP), while they typically synthesize polyhydroxyalkanoates (PHAs) under anaerobic conditions. Many ecological, physiological, and genomic analyses have been performed with proteobacterial PAOs, but few with actinobacterial PAOs. In this study, the whole genome sequence of an actinobacterial PAO, Microlunatus phosphovorus NM-1(T) (NBRC 101784(T)), was determined. The number of genes for polyP metabolism was greater in M. phosphovorus than in other actinobacteria; it possesses genes for four polyP kinases (ppks), two polyP-dependent glucokinases (ppgks), and three phosphate transporters (pits). In contrast, it harbours only a single ppx gene for exopolyphosphatase, although two copies of ppx are generally present in other actinobacteria. Furthermore, M. phosphovorus lacks the phaABC genes for PHA synthesis and the actP gene encoding an acetate/H(+) symporter, both of which play crucial roles in anaerobic PHA accumulation in proteobacterial PAOs. Thus, while the general features of M. phosphovorus regarding aerobic polyP accumulation are similar to those of proteobacterial PAOs, its anaerobic polyP use and PHA synthesis appear to be different.

Indexed as

Acid Anhydride HydrolasesBase SequenceGenome, BacterialMolecular Sequence DataPhosphate Transport ProteinsPhosphotransferasesPhylogenyPhysical Chromosome MappingPolyhydroxyalkanoatesPolyphosphatesPropionibacteriaceaeSequence Analysis, DNAAcid Anhydride HydrolasesexopolyphosphatasePhosphate Transport ProteinsPhosphotransferasesPolyhydroxyalkanoatesPolyphosphates

Identifiers

PMID22923697
PMCPMC3473371
OpenAlexW2134249402

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.