Evidence map›Paper›PMID 22923694›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2012

Transgenerational epigenetic effects of the Apobec1 cytidine deaminase deficiency on testicular germ cell tumor susceptibility and embryonic viability.

Vicki R Nelson, Jason D Heaney, Paul J Tesar, Nicholas O Davidson, Joseph H Nadeau

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed, 1 pooled it
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 1 synthesis or guideline pooled it, 58 citations in OpenAlex.

  1. Pooled it
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  4. The extensive mNature communications · 2024
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  10. Genetic control of non-genetic inheritance in mammals: state-of-the-art and perspectives.Mammalian genome : official journal of the International Mammalian Genome Society · 2020
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 1 country.

Vicki R NelsonDepartment of Genetics, Case Western Reserve University School of Medicine, Cleveland, OH 44106, USA.
Jason D Heaney
Paul J Tesar
Nicholas O Davidson
Joseph H Nadeau
Case Western Reserve University · USInstitute for Systems Biology · USUniversity School · USWashington University in St. Louis · US

Funding

MEDICAL SCIENTIST TRAINING PROGRAMT32GM007250 · NIGMS · CASE WESTERN RESERVE UNIVERSITY · PI HUANG, ALEX YEE-CHEN · 1985 to 2023
$33.4M
Washington University DDRCC Supplemental Equipment RequestP30DK052574 · NIDDK · WASHINGTON UNIVERSITY · PI Jeffrey Wade Brown · 2000 to 2026
$30.8M
HEPATIC SYNTHESIS AND SECRETION OF APOLIPOPROTEIN (A)R01DK056260 · NIDDK · WASHINGTON UNIVERSITY · PI DAVIDSON, NICHOLAS O. · 1999 to 2017
$5.9M
GENETIC CONTROL OF SUSCEPTIBILITY TO TESTICULAR CANCERR01CA075056 · NCI · PACIFIC NORTHWEST RESEARCH INSTITUTE · PI NADEAU, JOSEPH H. · 1998 to 2014
$5.7M
ENTEROHEPATIC LIPID FLUX AND APOPROTEIN BIOSYNTHESIS.R37HL038180 · NHLBI · WASHINGTON UNIVERSITY · PI DAVIDSON, NICHOLAS O. · 2000 to 2009
$5.1M
ENTEROHEPATIC LIPID FLUX AND APOPROTEIN BIOSYNTHESISR01HL038180 · NHLBI · WASHINGTON UNIVERSITY · PI DAVIDSON, NICHOLAS O. · 1986 to 2018
$3.8M
Lamarck Redux: Transgenerational genetic effects on phenotypes and diseaseDP1HD075624 · NICHD · PACIFIC NORTHWEST RESEARCH INSTITUTE · PI NADEAU, JOSEPH H. · 2012 to 2014
$2.6M
Lamarck Redux: Transgenerational genetic effects on phenotypes and diseaseDP1OD006911 · OD · INSTITUTE FOR SYSTEMS BIOLOGY · PI NADEAU, JOSEPH H. · 2010 to 2011
$1.7M
Primordial germ cell differentiation and the initiation of testicular cancerR00HD059945 · NICHD · BAYLOR COLLEGE OF MEDICINE · PI HEANEY, JASON D. · 2012 to 2014
$710k
NCI NIH HHS CA75056NCI NIH HHS R01 CA075056NHLBI NIH HHS HL-38180NHLBI NIH HHS R01 HL038180NHLBI NIH HHS R37 HL038180NICHD NIH HHS DP1 HD075624NICHD NIH HHS R00 HD059945NIDDK NIH HHS DK-52574NIDDK NIH HHS DK-56260NIDDK NIH HHS P30 DK052574NIDDK NIH HHS R01 DK056260NIGMS NIH HHS T32 GM007250NIH HHS DP1 OD006911NIH HHS DP1OD006911
6 · The paper itself

Abstract

Environmental agents and genetic variants can induce heritable epigenetic changes that affect phenotypic variation and disease risk in many species. These transgenerational effects challenge conventional understanding about the modes and mechanisms of inheritance, but their molecular basis is poorly understood. The Deadend1 (Dnd1) gene enhances susceptibility to testicular germ cell tumors (TGCTs) in mice, in part by interacting epigenetically with other TGCT modifier genes in previous generations. Sequence homology to A1cf, the RNA-binding subunit of the ApoB editing complex, raises the possibility that the function of Dnd1 is related to Apobec1 activity as a cytidine deaminase. We conducted a series of experiments with a genetically engineered deficiency of Apobec1 on the TGCT-susceptible 129/Sv inbred background to determine whether dosage of Apobec1 modifies susceptibility, either alone or in combination with Dnd1, and either in a conventional or a transgenerational manner. In the paternal germ-lineage, Apobec1 deficiency significantly increased susceptibility among heterozygous but not wild-type male offspring, without subsequent transgenerational effects, showing that increased TGCT risk resulting from partial loss of Apobec1 function is inherited in a conventional manner. By contrast, partial deficiency in the maternal germ-lineage led to suppression of TGCTs in both partially and fully deficient males and significantly reduced TGCT risk in a transgenerational manner among wild-type offspring. These heritable epigenetic changes persisted for multiple generations and were fully reversed after consecutive crosses through the alternative germ-lineage. These results suggest that Apobec1 plays a central role in controlling TGCT susceptibility in both a conventional and a transgenerational manner.

Indexed as

Genetic Predisposition to DiseaseAnimalsAPOBEC-1 DeaminaseChi-Square DistributionCytidine DeaminaseEmbryo, MammalianEpigenomicsFemaleGene FrequencyGenotypeInheritance PatternsMaleMiceMice, 129 StrainMice, KnockoutMutationAPOBEC-1 DeaminaseApobec1 protein, mouseCytidine DeaminaseDnd1 protein, mouseNeoplasm Proteins

Identifiers

PMID22923694
PMCPMC3478648
OpenAlexW2045551202

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.