Evidence map›Paper›PMID 22923613›Full record

ArticleThe Journal of biological chemistry2012

Role of cysteine residues in heme binding to human heme oxygenase-2 elucidated by two-dimensional NMR spectroscopy.

Fatbardha Varfaj, Jed N Lampe, Paul R Ortiz de Montellano

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 29 citations in OpenAlex.

  1. Review
  2. MnTnHex-2-PyPAntioxidants (Basel, Switzerland) · 2021
    Article
  3. Review
  4. Article
  5. Review
  6. Review
  7. Article
  8. Regulation of intracellular heme trafficking revealed by subcellular reporters.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  9. Article
  10. Article
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  12. Article
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  14. Article
  15. Carbon-carbon bond cleavage in activation of the prodrug nabumetone.Drug metabolism and disposition: the biological fate of chemicals · 2014
    Article
  16. Signaling function of heme oxygenase proteins.Antioxidants & redox signaling · 2014
    Review
  17. Review
  18. Heme sensor proteins.The Journal of biological chemistry · 2013
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Fatbardha VarfajDepartment of Pharmaceutical Chemistry, School of Pharmacy, University of California, San Francisco, California 94158-2517.
Jed N LampeDepartment of Pharmaceutical Chemistry, School of Pharmacy, University of California, San Francisco, California 94158-2517.
Paul R Ortiz de MontellanoDepartment of Pharmaceutical Chemistry, School of Pharmacy, University of California, San Francisco, California 94158-2517. Electronic address: ortiz@cgl.ucsf.edu.
University of California, San Francisco · US

Funding

HEMOPROTEIN OXIDATION AND HEME CATABOLISMR01DK030297 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ORTIZ DE MONTELLANO, PAUL R · 1986 to 2013
$2.9M
NIDDK NIH HHS DK30297NIDDK NIH HHS R01 DK030297
6 · The paper itself

Abstract

Human heme oxygenases 1 and 2 (HO-1 and HO-2) degrade heme in the presence of oxygen and NADPH-cytochrome P450 reductase, producing ferrous iron, CO, and biliverdin. HO-1 is an inducible enzyme, but HO-2 is constitutively expressed in selected tissues and is involved in signaling and regulatory processes. HO-2 has three cysteine residues that have been proposed to modulate the affinity for heme, whereas HO-1 has none. Here we use site-specific mutagenesis and two-dimensional NMR of l-[3-(13)C]cysteine-labeled proteins to determine the redox state of the individual cysteines in HO-2 and assess their roles in binding of heme. The results indicate that in the apoprotein, Cys(282) and Cys(265) are in the oxidized state, probably in an intramolecular disulfide bond. The addition of a reducing agent converts them to the reduced, free thiol state. Two-dimensional NMR of site-specific mutants reveals that the redox state of Cys(265) and Cys(282) varies with the presence or absence of other Cys residues, indicating that the microenvironments of the Cys residues are mutually interdependent. Cys(265) appears to be in a relatively hydrophilic, oxidizable environment compared with Cys(127) and Cys(282). Chemical shift data indicate that none of the cysteines stably coordinates to the heme iron atom. In the oxidized state of the apoprotein, heme is bound 2.5-fold more tightly than in the reduced state. This small difference in heme affinity between the oxidized and reduced states of the protein is much less than previously reported, suggesting that it is not a significant factor in the physiological regulation of cellular heme levels.

Indexed as

Protein FoldingCarbon IsotopesCysteineHemeHeme Oxygenase (Decyclizing)HumansIsotope LabelingMutagenesis, Site-DirectedNuclear Magnetic Resonance, BiomolecularOxidation-ReductionProtein BindingProtein Structure, TertiaryCarbon IsotopesCysteineHemeheme oxygenase-2Heme Oxygenase (Decyclizing)

Identifiers

PMID22923613
PMCPMC3471713
OpenAlexW2004675426

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.