Evidence map›Paper›PMID 22923498›Full record

ArticleJournal of molecular cell biology2013

Reduced DEAF1 function during type 1 diabetes inhibits translation in lymph node stromal cells by suppressing Eif4g3.

Linda Yip, Remi J Creusot, Cara T Pager, Peter Sarnow, C Garrison Fathman

Open access · bronzeAbstract read
In one paragraph

Article in Journal of molecular cell biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 38 citations in OpenAlex.

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  18. De novo and biallelic DEAF1 variants cause a phenotypic spectrum.Genetics in medicine : official journal of the American College of Medical Genetics · 2019
    Article
  19. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Linda YipDivision of Immunology and Rheumatology, Department of Medicine, Stanford University, Stanford, CA 94305, USA.
Remi J Creusot
Cara T Pager
Peter Sarnow
C Garrison Fathman
Stanford University · US

Funding

Immunoregulation of AutoimmunityU01DK078123 · NIDDK · STANFORD UNIVERSITY · PI FATHMAN, CHARLES GARRISON · 2006 to 2011
$1.9M
Deaf1 isoforms control changes in PTA expression in the NOD PLN during T1D pathogR01AI083628 · NIAID · STANFORD UNIVERSITY · PI FATHMAN, CHARLES GARRISON · 2010 to 2013
$1.6M
NIAID NIH HHS AI083628NIAID NIH HHS R01 AI083628NIDDK NIH HHS DK078123
6 · The paper itself

Abstract

The transcriptional regulator deformed epidermal autoregulatory factor 1 (DEAF1) has been suggested to play a role in maintaining peripheral tolerance by controlling the transcription of peripheral tissue antigen genes in lymph node stromal cells (LNSCs). Here, we demonstrate that DEAF1 also regulates the translation of genes in LNSCs by controlling the transcription of the poorly characterized eukaryotic translation initiation factor 4 gamma 3 (Eif4g3) that encodes eIF4GII. Eif4g3 gene expression was reduced in the pancreatic lymph nodes of Deaf1-KO mice, non-obese diabetic mice, and type 1 diabetes patients, where functional Deaf1 is absent or diminished. Silencing of Deaf1 reduced Eif4g3 expression, but increased the expression of Caspase 3, a serine protease that degrades eIF4GII. Polysome profiling showed that reduced Eif4g3 expression in LNSCs resulted in the diminished translation of various genes, including Anpep, the gene for aminopeptidase N, an enzyme involved in fine-tuning antigen presentation on major histocompatibility complex (MHC) class II. Together these findings suggest that reduced DEAF1 function, and subsequent loss of Eif4g3 transcription may affect peripheral tissue antigen (PTA) expression in LNSCs and contribute to the pathology of T1D.

Indexed as

Protein BiosynthesisAnimalsCaspase 3Diabetes Mellitus, Type 1DNA-Binding ProteinsEukaryotic Initiation Factor-4GGene Expression RegulationHistocompatibility Antigens Class IIImmune ToleranceLymph NodesMaleMiceMice, Inbred BALB CMice, Inbred NODMice, KnockoutPancreasCasp3 protein, mouseCaspase 3Deaf1 protein, mouseDNA-Binding ProteinsEif4g3 protein, mouseEukaryotic Initiation Factor-4GHistocompatibility Antigens Class IITranscription Factors

Identifiers

PMID22923498
PMCPMC3604916
OpenAlexW2164514549

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.