Evidence map›Paper›PMID 22923467›Full record

ArticleMolecular biology and evolution2013

The timing of pigmentation lightening in Europeans.

Sandra Beleza, António M Santos, Brian McEvoy, Isabel Alves, Cláudia Martinho, Emily Cameron, Mark D Shriver, Esteban J Parra, Jorge Rocha

Abstract read
In one paragraph

Article in Molecular biology and evolution, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 65 papers.

0numbers the graph read from it
0cells of the map it votes in
65citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

65 citing papers in PubMed.

  1. Review
  2. Observational
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Advances in integrative African genomics.Trends in genetics : TIG · 2022
    Review
  16. Review
  17. Review
  18. Article
  19. Article
  20. Article

5 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Sandra BelezaIPATIMUP, Instituto de Patologia e Imunologia Molecular da Universidade do Porto, Porto, Portugal. sbeleza@ipatimup.pt
António M Santos
Brian McEvoy
Isabel Alves
Cláudia Martinho
Emily Cameron
Mark D Shriver
Esteban J Parra
Jorge Rocha

Funding

CONSTRUCTION AND APPLICATION OF A US ADMIXTURE MAPR01HG002154 · NHGRI · PENNSYLVANIA STATE UNIVERSITY-UNIV PARK · PI SHRIVER, MARK D · 1999 to 2006
$1.7M
NHGRI NIH HHS HG002154NHGRI NIH HHS R01 HG002154
6 · The paper itself

Abstract

The inverse correlation between skin pigmentation and latitude observed in human populations is thought to have been shaped by selective pressures favoring lighter skin to facilitate vitamin D synthesis in regions far from the equator. Several candidate genes for skin pigmentation have been shown to exhibit patterns of polymorphism that overlap the geospatial variation in skin color. However, little work has focused on estimating the time frame over which skin pigmentation has changed and on the intensity of selection acting on different pigmentation genes. To provide a temporal framework for the evolution of lighter pigmentation, we used forward Monte Carlo simulations coupled with a rejection sampling algorithm to estimate the time of onset of selective sweeps and selection coefficients at four genes associated with this trait in Europeans: KITLG, TYRP1, SLC24A5, and SLC45A2. Using compound haplotype systems consisting of rapidly evolving microsatellites linked to one single-nucleotide polymorphism in each gene, we estimate that the onset of the sweep shared by Europeans and East Asians at KITLG occurred approximately 30,000 years ago, after the out-of-Africa migration, whereas the selective sweeps for the European-specific alleles at TYRP1, SLC24A5, and SLC45A2 started much later, within the last 11,000-19,000 years, well after the first migrations of modern humans into Europe. We suggest that these patterns were influenced by recent increases in size of human populations, which favored the accumulation of advantageous variants at different loci.

Indexed as

Evolution, MolecularAfricaAllelesAntigens, NeoplasmAntiportersAsian PeopleDNAEthnicityEuropeGenetic LociHaplotypesHumansMembrane GlycoproteinsMembrane Transport ProteinsMicrosatellite RepeatsOxidoreductasesAntigens, NeoplasmAntiportersDNAMembrane GlycoproteinsMembrane Transport ProteinsOxidoreductasesSLC24A5 protein, humanSLC45A2 protein, humanTYRP1 protein, human

Identifiers

PMID22923467
PMCPMC3525146

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.