Evidence map›Paper›PMID 22923463›Full record

ArticleMolecular biology and evolution2013

Evolution of flux control in the glucosinolate pathway in Arabidopsis thaliana.

Carrie F Olson-Manning, Cheng-Ruei Lee, Mark D Rausher, Thomas Mitchell-Olds

Open access · bronzeAbstract read
In one paragraph

Article in Molecular biology and evolution, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 58 citations in OpenAlex.

  1. Article
  2. Article
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  5. Further insight into decreases in seed glucosinolate content based on QTL mapping and RNA-seq in Brassica napus L.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022
    Article
  6. Genome-wide association mapping within a localPhilosophical transactions of the Royal Society of London. Series B, Biological sciences · 2022
    Article
  7. Article
  8. Article
  9. The evolution of metabolism: How to test evolutionary hypotheses at the genomic level.Computational and structural biotechnology journal · 2020
    Review
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  17. Review
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  19. Article
  20. Evolution of a Catalytic Mechanism.Molecular biology and evolution · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Carrie F Olson-ManningDepartment of Biology, Duke University, Durham, NC, USA. cfo3@duke.edu
Cheng-Ruei Lee
Mark D Rausher
Thomas Mitchell-Olds
Duke University · US

Funding

Molecular Causes and Fitness Consequences of Complex Trait VariationR01GM086496 · NIGMS · DUKE UNIVERSITY · PI MITCHELL-OLDS, STORRS THOMAS · 2008 to 2017
$2.7M
NIGMS NIH HHS R01 GM086496
6 · The paper itself

Abstract

Network characteristics of biochemical pathways are believed to influence the rate of evolutionary change in constituent enzymes. One characteristic that may affect rate heterogeneity is control of the amount of product produced by a biochemical pathway or flux control. In particular, theoretical analyses suggest that adaptive substitutions should be concentrated in the enzyme(s) that exert the greatest control over flux. Although a handful of studies have found a correlation between position in a pathway and evolutionary rate, these investigations have not examined the relationship between evolutionary rate and flux control. Given that genes with greater control will experience stronger selection and that the probability of fixation is proportional to the selective advantage, we ask the following: 1) do upstream enzymes have majority flux control, 2) do enzymes with majority flux control accumulate adaptive substitutions, and 3) are upstream enzymes under higher selective constraint? First, by perturbing the enzymes in the aliphatic glucosinolate pathway in Arabidopsis thaliana with gene insertion lines, we show that flux control is focused in the first enzyme in the pathway. Next, by analyzing several sequence signatures of selection, we also show that this enzyme is the only one in the pathway that shows convincing evidence of selection. Our results support the hypothesis that natural selection preferentially acts on enzymes with high flux control.

Indexed as

Evolution, MolecularGene Expression Regulation, PlantArabidopsisArabidopsis ProteinsGlucosinolatesHeterozygoteMetabolic Networks and PathwaysMutagenesis, InsertionalReal-Time Polymerase Chain ReactionSelection, GeneticSequence Analysis, DNASulfotransferasesArabidopsis ProteinsGlucosinolatesSOT18 protein, ArabidopsisSulfotransferases

Identifiers

PMID22923463
PMCPMC3525143
OpenAlexW2130451962

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.