Evidence map›Paper›PMID 22923412›Full record

ArticleApplied and environmental microbiology2012

Versatility in corrinoid salvaging and remodeling pathways supports corrinoid-dependent metabolism in Dehalococcoides mccartyi.

Shan Yi, Erica C Seth, Yu-Jie Men, Sally P Stabler, Robert H Allen, Lisa Alvarez-Cohen, Michiko E Taga

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 69 papers.

0numbers the graph read from it
0cells of the map it votes in
69citing papers in PubMed
4.0field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

69 citing papers in PubMed, 127 citations in OpenAlex.

  1. Article
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  4. Review
  5. Article
  6. Laboratory evolution ofJournal of bacteriology · 2025
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  7. Review
  8. Laboratory evolution ofbioRxiv : the preprint server for biology · 2024
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  13. Review
  14. Article
  15. Article
  16. Identification of vitamin BBiotechnology letters · 2023
    Article
  17. Article
  18. Article
  19. Article
  20. Availability of vitamin BThe ISME journal · 2022
    Article

9 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Shan YiDepartment of Civil and Environmental Engineering, University of California, Berkeley, California, USA.
Erica C Seth
Yu-Jie Men
Sally P Stabler
Robert H Allen
Lisa Alvarez-Cohen
Michiko E Taga
University of California, Berkeley · USUniversity of Colorado Anschutz Medical Campus · USLawrence Berkeley National Laboratory · US

Funding

Training CoreP42ES004705 · NIEHS · UNIVERSITY OF CALIFORNIA BERKELEY · PI MORELLO-FROSCH, RACHEL ADELE · 1987 to 2025
$74.6M
Dynamics of Signaling Pathways: Mechanism and FunctionR01GM083303 · NIGMS · HARVARD MEDICAL SCHOOL · PI LAHAV, GALIT · 2008 to 2020
$5.2M
NIEHS NIH HHS ES04705-19NIEHS NIH HHS P42 ES004705NIGMS NIH HHS R00-GM083303NIGMS NIH HHS R01 GM083303
6 · The paper itself

Abstract

Corrinoids are cobalt-containing molecules that function as enzyme cofactors in a wide variety of organisms but are produced solely by a subset of prokaryotes. Specific corrinoids are identified by the structure of their axial ligands. The lower axial ligand of a corrinoid can be a benzimidazole, purine, or phenolic compound. Though it is known that many organisms obtain corrinoids from the environment, the variety of corrinoids that can serve as cofactors for any one organism is largely unstudied. Here, we examine the range of corrinoids that function as cofactors for corrinoid-dependent metabolism in Dehalococcoides mccartyi strain 195. Dehalococcoides bacteria play an important role in the bioremediation of chlorinated solvents in the environment because of their unique ability to convert the common groundwater contaminants perchloroethene and trichloroethene to the innocuous end product ethene. All isolated D. mccartyi strains require exogenous corrinoids such as vitamin B(12) for growth. However, like many other corrinoid-dependent bacteria, none of the well-characterized D. mccartyi strains has been shown to be capable of synthesizing corrinoids de novo. In this study, we investigate the ability of D. mccartyi strain 195 to use specific corrinoids, as well as its ability to modify imported corrinoids to a functional form. We show that strain 195 can use only specific corrinoids containing benzimidazole lower ligands but is capable of remodeling other corrinoids by lower ligand replacement when provided a functional benzimidazole base. This study of corrinoid utilization and modification by D. mccartyi provides insight into the array of strategies that microorganisms employ in acquiring essential nutrients from the environment.

Indexed as

Biodegradation, EnvironmentalChloroflexiCobaltCorrinoidsEthylenesTetrachloroethyleneTrichloroethyleneCobaltCorrinoidsethyleneEthylenesTetrachloroethyleneTrichloroethylene

Identifiers

PMID22923412
PMCPMC3485714
OpenAlexW2121310478

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.