Evidence map›Paper›PMID 22923048›Full record

ArticleEukaryotic cell2012

Gain-of-function mutations in UPC2 are a frequent cause of ERG11 upregulation in azole-resistant clinical isolates of Candida albicans.

Stephanie A Flowers, Katherine S Barker, Elizabeth L Berkow, Geoffrey Toner, Sean G Chadwick, Scott E Gygax, Joachim Morschhäuser, P David Rogers

Open access · diamondAbstract read
In one paragraph

Article in Eukaryotic cell, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 139 papers.

0numbers the graph read from it
0cells of the map it votes in
139citing papers in PubMed
6.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

139 citing papers in PubMed, 236 citations in OpenAlex.

  1. Article
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  13. Genetic interaction analysis ofAntimicrobial agents and chemotherapy · 2025
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  15. mSphere · 2024
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  16. Review
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  19. Article
  20. Article

79 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Stephanie A FlowersDepartment of Clinical Pharmacy, University of Tennessee Health Sciences Center, Memphis, TN, USA.
Katherine S Barker
Elizabeth L Berkow
Geoffrey Toner
Sean G Chadwick
Scott E Gygax
Joachim Morschhäuser
P David Rogers
University of Tennessee Health Science Center · USMedical Diagnostic Laboratories (United States) · USUniversity of Würzburg · DE

Funding

Novel Azole Resistance Mechanisms in Candida albicansR01AI058145 · NIAID · UNIVERSITY OF TENNESSEE HEALTH SCI CTR · PI ROGERS, P. DAVID · 2005 to 2021
$5.8M
NIAID NIH HHS R01 AI058145NIAID NIH HHS R01AI058145
6 · The paper itself

Abstract

In Candida albicans, Upc2 is a zinc-cluster transcription factor that targets genes, including those of the ergosterol biosynthesis pathway. To date, three documented UPC2 gain-of-function (GOF) mutations have been recovered from fluconazole-resistant clinical isolates that contribute to an increase in ERG11 expression and decreased fluconazole susceptibility. In a group of 63 isolates with reduced susceptibility to fluconazole, we found that 47 overexpressed ERG11 by at least 2-fold over the average expression levels in 3 unrelated fluconazole-susceptible strains. Of those 47 isolates, 29 contained a mutation in UPC2, whereas the remaining 18 isolates did not. Among the isolates containing mutations in UPC2, we recovered eight distinct mutations resulting in putative single amino acid substitutions: G648D, G648S, A643T, A643V, Y642F, G304R, A646V, and W478C. Seven of these resulted in increased ERG11 expression, increased cellular ergosterol, and decreased susceptibility to fluconazole compared to the results for the wild-type strain. Genome-wide transcriptional analysis was performed for the four strongest Upc2 amino acid substitutions (A643V, G648D, G648S, and Y642F). Genes commonly upregulated by all four mutations included those involved in ergosterol biosynthesis, in oxidoreductase activity, the major facilitator efflux pump encoded by the MDR1 gene, and the uncharacterized ATP binding cassette transporter CDR11. These findings demonstrate that gain-of-function mutations in UPC2 are more prevalent among clinical isolates than previously thought and make a significant contribution to azole antifungal resistance, but the findings do not account for ERG11 overexpression in all such isolates of C. albicans.

Indexed as

Mutation, MissenseAntifungal AgentsATP Binding Cassette Transporter, Subfamily B, Member 1Candida albicansCytochrome P-450 Enzyme SystemDrug Resistance, FungalErgosterolFluconazoleFungal ProteinsGenome, FungalTranscription FactorsTranscription, GeneticUp-RegulationAntifungal AgentsATP Binding Cassette Transporter, Subfamily B, Member 1Cytochrome P-450 Enzyme SystemErgosterolFluconazoleFungal ProteinsTranscription Factors

Identifiers

PMID22923048
PMCPMC3485914
OpenAlexW2169755129

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.