Evidence map›Paper›PMID 22923025›Full record

ArticleCancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology2012

Fine-mapping of IL16 gene and prostate cancer risk in African Americans.

Ken Batai, Ebony Shah, Adam B Murphy, Jennifer Newsome, Maria Ruden, Chiledum Ahaghotu, Rick A Kittles

Open access · greenAbstract read
In one paragraph

Article in Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 24 citations in OpenAlex.

  1. Trial
  2. Article
  3. Review
  4. Article
  5. Article
  6. Association of functionalOncotarget · 2020
    Article
  7. The role of IL‑16 gene polymorphisms in endometriosis.International journal of molecular medicine · 2018
    Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Ken BataiInstitute of Human Genetics, College of Medicine, School of Public Health, University of Illinois at Chicago, Chicago, IL 60607-4067, USA.
Ebony Shah
Adam B Murphy
Jennifer Newsome
Maria Ruden
Chiledum Ahaghotu
Rick A Kittles
Northwestern University · USUniversity of Illinois Chicago · USHoward University Hospital · US

Funding

Resources and Infrastructure: Faculty RecruitmentU54CA091431 · NCI · HOWARD UNIVERSITY · PI FREDERICK, WAYNE ALIX IAN · 2001 to 2010
$15.9M
A Genome-wide Association Study of Prostate Cancer in African AmericansU01CA136792 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI HENDERSON, BRIAN E · 2009 to 2011
$9.4M
Expanding resources for understanding the genetic basis for prostate cancer in AfRC2CA148085 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI HAIMAN, CHRISTOPHER ALAN · 2009 to 2010
$2.8M
CSRD VA IK2 CX000926NCI NIH HHS RC2 CA148085NCI NIH HHS RC2-CA148085-01NCI NIH HHS U01 CA136792NCI NIH HHS U01 CA136792-02S1NCI NIH HHS U54 CA091431
6 · The paper itself

Abstract

backgroundProstate cancer is the most common type of cancer among men in the United States, and its incidence and mortality rates are disproportionate among ethnic groups. Although genome-wide association studies of European descents have identified candidate loci associated with prostate cancer risk, including a variant in IL16, replication studies in African Americans (AA) have been inconsistent. Here we explore single-nucleotide polymorphism (SNP) variation in IL16 in AAs and test for association with prostate cancer.

methodsAssociation tests were conducted for 2,257 genotyped and imputed SNPs spanning IL16 in 605 AA prostate cancer cases and controls from Washington, D.C. Eleven of them were also genotyped in a replication population of 1,093 AAs from Chicago. We tested for allelic association adjusting for age, global and local West African ancestry.

resultsAnalyses of genotyped and imputed SNPs revealed that a cluster of IL16 SNPs were significantly associated with prostate cancer risk. The strongest association was found at rs7175701 (P = 9.8 × 10(-8)). In the Chicago population, another SNP (rs11556218) was associated with prostate cancer risk (P = 0.01). In the pooled analysis, we identified three independent loci within IL16 that were associated with prostate cancer risk. SNP expression quantitative trait loci analyses revealed that rs7175701 is predicted to influence the expression of IL16 and other cancer-related genes.

conclusionOur study provides evidence that IL16 polymorphisms play a role in prostate cancer susceptibility among AAs. IMPACT: Our findings are significant given that there has been limited focus on the role of IL16 genetic polymorphisms on prostate cancer risk in AAs.

Indexed as

AllelesBlack or African AmericanCase-Control StudiesDistrict of ColumbiaGenetic Predisposition to DiseaseGenome-Wide Association StudyHumansInterleukin-16MaleMiddle AgedPolymorphism, Single NucleotideProstatic NeoplasmsRisk FactorsInterleukin-16

Identifiers

PMID22923025
PMCPMC3493680
OpenAlexW2154593984

What OpenQuestion holds

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LicenceTDM
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.