Evidence map›Paper›PMID 22922940›Full record

ArticlePlanta2012

Novel conserved segments are associated with differential expression patterns for Pinaceae dehydrins.

Pedro Perdiguero, M Carmen Barbero, M Teresa Cervera, Alvaro Soto, Carmen Collada

Abstract read
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In one paragraph

Article in Planta, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Article
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  4. Under Stress: Searching for Genes Involved in the Response ofInternational journal of molecular sciences · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Pedro PerdigueroGENFOR Grupo de investigación en Genética y Fisiología Forestal, Universidad Politécnica de Madrid, 28040, Madrid, Spain.
M Carmen Barbero
M Teresa Cervera
Alvaro Soto
Carmen Collada

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Dehydrins are thought to play an essential role in the response, acclimation and tolerance to different abiotic stresses, such as cold and drought. These proteins have been classified into five groups according to the presence of conserved and repeated motifs in their amino acid sequence. Due to their putative functions in the response to stress, dehydrins have been often used as candidate genes in studies on population variability and local adaptation to environmental conditions. However, little is still known regarding the differential role played by such groups or the mechanism underlying their function. Based on the sequences corresponding to dehydrins available in public databases we have isolated eight different dehydrins from cDNA of Pinus pinaster. We have obtained also their genomic sequences and identified their intron/exon structure. Quantitative RT-PCR analysis of their expression pattern in needles, stems and roots during a severe and prolonged drought stress, similar to the ones trees must face in nature, is also reported. Additionally, we have identified two amino acid motifs highly conserved and repeated in Pinaceae dehydrins and absent in angiosperms, presumably related to the divergent expression profiles observed.

Indexed as

Adaptation, PhysiologicalAmino Acid MotifsAmino Acid SequenceDNA, ComplementaryDNA, PlantDroughtsGene Expression Regulation, PlantGenotypeMagnoliopsidaMolecular Sequence DataPinaceaePlant LeavesPlant ProteinsPlant RootsPlant StemsReal-Time Polymerase Chain Reactiondehydrin proteins, plantDNA, ComplementaryDNA, PlantPlant ProteinsRNA, Plant

Identifiers

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.