Evidence map›Paper›PMID 22921533›Full record

ArticleVirology2012

Analysis of the genome of leporid herpesvirus 4.

Bobby Babra, Gregory Watson, Wayne Xu, Brendan M Jeffrey, Jia-Rong Xu, Daniel D Rockey, George F Rohrmann, Ling Jin

Abstract read
In one paragraph

Article in Virology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.6field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 9 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Bobby BabraDepartment of Biomedical Sciences, College of Veterinary Medicine, Oregon State University, Corvallis, OR 97331, USA.
Gregory Watson
Wayne Xu
Brendan M Jeffrey
Jia-Rong Xu
Daniel D Rockey
George F Rohrmann
Ling Jin
Oregon State University · USNanjing Agricultural University · CNUniversity of Minnesota · US

Funding

Characterization of a novel rabbit herpes simplexvirus: a possible model for undeR03AI080999 · NIAID · OREGON STATE UNIVERSITY · PI JIN, LING · 2009 to 2010
$146k
NIAID NIH HHS R03 AI080999NIAID NIH HHS R03AI080999
6 · The paper itself

Abstract

The genome of a herpesvirus highly pathogenic to rabbits, leporid herpesvirus 4 (LHV-4), was analyzed using high-throughput DNA sequencing technology and primer walking. The assembled DNA sequences were further verified by restriction endonuclease digestion and Southern blot analyses. The total length of the LHV-4 genome was determined to be about 124 kb. Genes encoded in the LHV-4 genome are most closely related to herpesvirus of the Simplexvirus genus, including human herpesviruses (HHV-1 and HHV-2), monkey herpesviruses including cercopithicine (CeHV-2 and CeHV-16), macacine (McHV-1), bovine herpesvirus 2 (BHV-2), and a lineage of wallaby (macropodid) herpesviruses (MaHV-1 and -2). Similar to other simplexvirus genomes, LHV-4 has a high overall G+C content of 65-70% in the unique regions and 75-77% in the inverted repeat regions. Orthologs of ICP34.5 and US5 were not identified in the LHV-4 genome. This study shows that LHV-4 has the smallest simplexvirus genome characterized to date.

Indexed as

Genome, ViralAnimalsBase CompositionCells, CulturedDNA, ViralGenome SizeHigh-Throughput Nucleotide SequencingHumansInverted Repeat SequencesMolecular Sequence DataOpen Reading FramesPhylogenyRabbitsRestriction MappingSequence Analysis, DNASimplexvirusDNA, ViralViral Proteins

Identifiers

PMID22921533
PMCPMC3474708
OpenAlexW2018074969

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.